Suppr超能文献

合成分解降解模型解释了未受精卵中 Bicoid 梯度的形成。

The synthesis-diffusion-degradation model explains Bicoid gradient formation in unfertilized eggs.

机构信息

Joseph Henry Laboratories of Physics, Princeton University, Princeton, NJ 08544, USA.

出版信息

Phys Biol. 2012 Oct;9(5):055004. doi: 10.1088/1478-3975/9/5/055004. Epub 2012 Sep 25.

Abstract

Precise formation of morphogen gradients is essential to the establishment of reproducible pattern in development. Mechanisms proposed for obtaining the requisite precision range from simple models with few parameters to more complex models involving many regulated quantities. The synthesis-diffusion-degradation (SDD) model is a relatively simple model explaining the formation of the Bicoid gradient in Drosophila melanogaster, in which the steady-state characteristic length of the gradient is determined solely by the rates of diffusion and degradation of the morphogen. In this work, we test the SDD model in unfertilized D. melanogaster eggs, which contain a single female pronucleus and lack the nuclear division cycles and other zygotic regulatory processes seen in fertilized eggs. Using two-photon live imaging as well as a novel method for quantitative imaging based on decorrelation of photoswitching waveforms, we find that the Bicoid gradient is longer and shallower in unfertilized eggs as compared to the gradient at the same time points in fertilized eggs. Using a means of measuring the Bicoid lifetime by conjugation to a photoconvertible fluorophore, we find that the lifetime is correspondingly longer in unfertilized eggs, providing qualitative and quantitative agreement with the predictions of the SDD model.

摘要

精确形成形态发生梯度对于在发育中建立可重复的模式至关重要。所提出的获得所需精度的机制范围从具有少数参数的简单模型到涉及许多调节数量的更复杂模型。合成-扩散-降解(SDD)模型是一个相对简单的模型,用于解释果蝇中 Bicoid 梯度的形成,其中梯度的稳态特征长度仅由形态发生物质的扩散和降解速率决定。在这项工作中,我们在未受精的果蝇卵中测试了 SDD 模型,这些卵仅含有一个雌性原核,并且缺乏受精卵中所见的核分裂周期和其他合子调节过程。使用双光子活成像以及一种基于光开关波形去相关的定量成像新方法,我们发现与受精卵中相同时间点的梯度相比,未受精卵中的 Bicoid 梯度更长且更浅。通过与光可转化荧光团缀合来测量 Bicoid 寿命的方法,我们发现未受精卵中的寿命相应地更长,与 SDD 模型的预测具有定性和定量的一致性。

相似文献

1
The synthesis-diffusion-degradation model explains Bicoid gradient formation in unfertilized eggs.
Phys Biol. 2012 Oct;9(5):055004. doi: 10.1088/1478-3975/9/5/055004. Epub 2012 Sep 25.
2
Bicoid gradient formation mechanism and dynamics revealed by protein lifetime analysis.
Mol Syst Biol. 2018 Sep 4;14(9):e8355. doi: 10.15252/msb.20188355.
3
Measurement and perturbation of morphogen lifetime: effects on gradient shape.
Biophys J. 2011 Oct 19;101(8):1807-15. doi: 10.1016/j.bpj.2011.07.025.
4
The formation of the Bicoid morphogen gradient requires protein movement from anteriorly localized mRNA.
PLoS Biol. 2011 Mar;9(3):e1000596. doi: 10.1371/journal.pbio.1000596. Epub 2011 Mar 1.
5
Stability and nuclear dynamics of the bicoid morphogen gradient.
Cell. 2007 Jul 13;130(1):141-52. doi: 10.1016/j.cell.2007.05.026.
6
Cortical movement of Bicoid in early Drosophila embryos is actin- and microtubule-dependent and disagrees with the SDD diffusion model.
PLoS One. 2017 Oct 3;12(10):e0185443. doi: 10.1371/journal.pone.0185443. eCollection 2017.
7
Determining the scale of the Bicoid morphogen gradient.
Proc Natl Acad Sci U S A. 2009 Feb 10;106(6):1710-5. doi: 10.1073/pnas.0807655106. Epub 2009 Feb 3.
8
A precise Bicoid gradient is nonessential during cycles 11-13 for precise patterning in the Drosophila blastoderm.
PLoS One. 2008;3(11):e3651. doi: 10.1371/journal.pone.0003651. Epub 2008 Nov 7.
10
Messages do diffuse faster than messengers: reconciling disparate estimates of the morphogen bicoid diffusion coefficient.
PLoS Comput Biol. 2014 Jun 5;10(6):e1003629. doi: 10.1371/journal.pcbi.1003629. eCollection 2014 Jun.

引用本文的文献

1
Memoryless chemotaxis with discrete cues.
J R Soc Interface. 2024 Jul;21(216):20240100. doi: 10.1098/rsif.2024.0100. Epub 2024 Jul 31.
3
Size regulation of the lateral organ initiation zone and its role in determining cotyledon number in conifers.
Front Plant Sci. 2023 May 17;14:1166226. doi: 10.3389/fpls.2023.1166226. eCollection 2023.
5
Modulating the bicoid gradient in space and time.
Hereditas. 2021 Aug 17;158(1):29. doi: 10.1186/s41065-021-00192-y.
7
Insights into mammalian morphogen dynamics from embryonic stem cell systems.
Curr Top Dev Biol. 2020;137:279-305. doi: 10.1016/bs.ctdb.2019.11.010. Epub 2020 Feb 13.
8
No significant regulation of bicoid mRNA by Pumilio or Nanos in the early Drosophila embryo.
PLoS One. 2018 Mar 30;13(3):e0194865. doi: 10.1371/journal.pone.0194865. eCollection 2018.
9
Cortical movement of Bicoid in early Drosophila embryos is actin- and microtubule-dependent and disagrees with the SDD diffusion model.
PLoS One. 2017 Oct 3;12(10):e0185443. doi: 10.1371/journal.pone.0185443. eCollection 2017.
10
Bicoid signal extraction with a selection of parametric and nonparametric signal processing techniques.
Genomics Proteomics Bioinformatics. 2015 Jun;13(3):183-91. doi: 10.1016/j.gpb.2015.02.006. Epub 2015 Jul 18.

本文引用的文献

1
Analysis of gap gene regulation in a 3D organism-scale model of the Drosophila melanogaster embryo.
PLoS One. 2011;6(11):e26797. doi: 10.1371/journal.pone.0026797. Epub 2011 Nov 16.
2
Ribosome profiling of mouse embryonic stem cells reveals the complexity and dynamics of mammalian proteomes.
Cell. 2011 Nov 11;147(4):789-802. doi: 10.1016/j.cell.2011.10.002. Epub 2011 Nov 3.
3
Measurement and perturbation of morphogen lifetime: effects on gradient shape.
Biophys J. 2011 Oct 19;101(8):1807-15. doi: 10.1016/j.bpj.2011.07.025.
4
The formation of the Bicoid morphogen gradient requires protein movement from anteriorly localized mRNA.
PLoS Biol. 2011 Mar;9(3):e1000596. doi: 10.1371/journal.pbio.1000596. Epub 2011 Mar 1.
6
The Bicoid gradient is shaped independently of nuclei.
Development. 2010 Sep 1;137(17):2857-62. doi: 10.1242/dev.052589.
7
A compartmental model for the bicoid gradient.
Dev Biol. 2010 Sep 1;345(1):12-7. doi: 10.1016/j.ydbio.2010.05.491. Epub 2010 May 24.
8
Modelling the Bicoid gradient.
Development. 2010 Jul;137(14):2253-64. doi: 10.1242/dev.032409.
9
Multiscale modeling of diffusion in the early Drosophila embryo.
Proc Natl Acad Sci U S A. 2010 Jun 1;107(22):10092-6. doi: 10.1073/pnas.1001139107. Epub 2010 May 17.
10
Optical lock-in detection imaging microscopy for contrast-enhanced imaging in living cells.
Proc Natl Acad Sci U S A. 2008 Nov 18;105(46):17789-94. doi: 10.1073/pnas.0808882105. Epub 2008 Nov 12.

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验