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PRGdb 2.0:建立一个基于社区的数据库模型,用于分析植物中的 R 基因。

PRGdb 2.0: towards a community-based database model for the analysis of R-genes in plants.

机构信息

Department of Soil, Plant, Environmental and Animal Production Sciences, University of Naples "Federico II", Via Università 100, 80055 Portici, Italy.

出版信息

Nucleic Acids Res. 2013 Jan;41(Database issue):D1167-71. doi: 10.1093/nar/gks1183. Epub 2012 Nov 17.

Abstract

The Plant Resistance Genes database (PRGdb; http://prgdb.org) is a comprehensive resource on resistance genes (R-genes), a major class of genes in plant genomes that convey disease resistance against pathogens. Initiated in 2009, the database has grown more than 6-fold to recently include annotation derived from recent plant genome sequencing projects. Release 2.0 currently hosts useful biological information on a set of 112 known and 104 310 putative R-genes present in 233 plant species and conferring resistance to 122 different pathogens. Moreover, the website has been completely redesigned with the implementation of Semantic MediaWiki technologies, which makes our repository freely accessed and easily edited by any scientists. To this purpose, we encourage plant biologist experts to join our annotation effort and share their knowledge on resistance-gene biology with the rest of the scientific community.

摘要

植物抗性基因数据库(PRGdb;http://prgdb.org)是一个关于抗性基因(R 基因)的综合资源,抗性基因是植物基因组中的一类主要基因,可赋予植物对病原体的抗病性。该数据库于 2009 年启动,现已扩展了 6 倍以上,最近还包括了来自最近植物基因组测序项目的注释。版本 2.0 目前包含了在 233 种植物物种中存在的 112 个已知和 104310 个推定的 R 基因的有用生物学信息,这些基因赋予了对 122 种不同病原体的抗性。此外,该网站已完全使用语义 MediaWiki 技术重新设计,使我们的存储库可由任何科学家免费访问和轻松编辑。为此,我们鼓励植物生物学家专家加入我们的注释工作,与科学界的其他成员分享他们对抗性基因生物学的知识。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0a00/3531111/29ec8a196df3/gks1183f1p.jpg

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