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本文引用的文献

1
Computational tools and resources for prediction and analysis of gene regulatory regions in the chick genome.用于预测和分析鸡基因组中基因调控区域的计算工具和资源。
Genesis. 2013 May;51(5):311-24. doi: 10.1002/dvg.22375. Epub 2013 Mar 30.
2
The peripheral sensory nervous system in the vertebrate head: a gene regulatory perspective.脊椎动物头部的周围感觉神经系统:基因调控视角。
Dev Biol. 2012 Oct 1;370(1):3-23. doi: 10.1016/j.ydbio.2012.06.028. Epub 2012 Jul 10.
3
Regulation of Six1 expression by evolutionarily conserved enhancers in tetrapods.四足动物中进化保守增强子对 Six1 表达的调控。
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Initial deployment of the cardiogenic gene regulatory network in the basal chordate, Ciona intestinalis.在基干脊索动物海鞘中的心源性基因调控网络的初步部署。
Dev Biol. 2012 Aug 1;368(1):127-39. doi: 10.1016/j.ydbio.2012.05.002. Epub 2012 May 14.
5
Mutual repression between Gbx2 and Otx2 in sensory placodes reveals a general mechanism for ectodermal patterning.Gbx2 和 Otx2 在感觉基板中的相互抑制揭示了外胚层模式形成的一般机制。
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Barcoded DNA-tag reporters for multiplex cis-regulatory analysis.条形码 DNA 标签报告基因用于多重顺式调控分析。
PLoS One. 2012;7(4):e35934. doi: 10.1371/journal.pone.0035934. Epub 2012 Apr 26.
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Identification of long non-protein coding RNAs in chicken skeletal muscle using next generation sequencing.利用下一代测序技术鉴定鸡骨骼肌中的长非编码 RNA。
Genomics. 2012 May;99(5):292-8. doi: 10.1016/j.ygeno.2012.02.003. Epub 2012 Feb 20.
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Xenopus: an ideal system for chemical genetics.非洲爪蟾:化学遗传学的理想系统。
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9
The prosensory function of Sox2 in the chicken inner ear relies on the direct regulation of Atoh1.Sox2 在鸡内耳中的前感觉功能依赖于 Atoh1 的直接调节。
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Gene regulatory logic for reading the Sonic Hedgehog signaling gradient in the vertebrate neural tube.脊椎动物神经管中 Sonic Hedgehog 信号梯度的基因调控逻辑。
Cell. 2012 Jan 20;148(1-2):273-84. doi: 10.1016/j.cell.2011.10.047.

构建基因调控网络的实验方法:以鸡作为模型系统

Experimental approaches for gene regulatory network construction: the chick as a model system.

作者信息

Streit Andrea, Tambalo Monica, Chen Jingchen, Grocott Timothy, Anwar Maryam, Sosinsky Alona, Stern Claudio D

机构信息

Department of Craniofacial Development and Stem Cell Biology, King's College London, London, United Kingdom.

出版信息

Genesis. 2013 May;51(5):296-310. doi: 10.1002/dvg.22359. Epub 2012 Dec 19.

DOI:10.1002/dvg.22359
PMID:23174848
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3626748/
Abstract

Setting up the body plan during embryonic development requires the coordinated action of many signals and transcriptional regulators in a precise temporal sequence and spatial pattern. The last decades have seen an explosion of information describing the molecular control of many developmental processes. The next challenge is to integrate this information into logic "wiring diagrams" that visualize gene actions and outputs, have predictive power and point to key control nodes. Here, we provide an experimental workflow on how to construct gene regulatory networks using the chick as model system.

摘要

在胚胎发育过程中建立身体蓝图需要许多信号和转录调节因子按照精确的时间顺序和空间模式协同作用。在过去几十年里,描述许多发育过程分子控制的信息呈爆炸式增长。下一个挑战是将这些信息整合到逻辑“线路图”中,这些线路图能够可视化基因的作用和输出,具有预测能力并指向关键控制节点。在这里,我们提供了一个关于如何使用鸡作为模型系统构建基因调控网络的实验工作流程。