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标准欧洲载体架构(SEVA):用于分析和部署复杂原核表型的一致平台。

The Standard European Vector Architecture (SEVA): a coherent platform for the analysis and deployment of complex prokaryotic phenotypes.

机构信息

Systems Biology Program, Centro Nacional de Biotecnología (CNB-CSIC), 28049 Cantoblanco-Madrid, Spain.

出版信息

Nucleic Acids Res. 2013 Jan;41(Database issue):D666-75. doi: 10.1093/nar/gks1119. Epub 2012 Nov 23.

Abstract

The 'Standard European Vector Architecture' database (SEVA-DB, http://seva.cnb.csic.es) was conceived as a user-friendly, web-based resource and a material clone repository to assist in the choice of optimal plasmid vectors for de-constructing and re-constructing complex prokaryotic phenotypes. The SEVA-DB adopts simple design concepts that facilitate the swapping of functional modules and the extension of genome engineering options to microorganisms beyond typical laboratory strains. Under the SEVA standard, every DNA portion of the plasmid vectors is minimized, edited for flaws in their sequence and/or functionality, and endowed with physical connectivity through three inter-segment insulators that are flanked by fixed, rare restriction sites. Such a scaffold enables the exchangeability of multiple origins of replication and diverse antibiotic selection markers to shape a frame for their further combination with a large variety of cargo modules that can be used for varied end-applications. The core collection of constructs that are available at the SEVA-DB has been produced as a starting point for the further expansion of the formatted vector platform. We argue that adoption of the SEVA format can become a shortcut to fill the phenomenal gap between the existing power of DNA synthesis and the actual engineering of predictable and efficacious bacteria.

摘要

“标准欧洲载体架构”数据库(SEVA-DB,http://seva.cnb.csic.es)被设计为一个用户友好的、基于网络的资源和材料克隆库,旨在帮助选择最佳的质粒载体,用于解构和重建复杂的原核表型。SEVA-DB 采用了简单的设计理念,便于功能模块的交换,并将基因组工程选项扩展到典型实验室菌株之外的微生物。在 SEVA 标准下,质粒载体的每个 DNA 部分都最小化,针对其序列和/或功能中的缺陷进行编辑,并通过三个位于固定、稀有限制位点侧翼的片段间绝缘子赋予物理连接性。这种支架允许复制起始点和多种抗生素选择标记的可交换性,以形成一个框架,进一步与各种货物模块组合,这些货物模块可用于各种最终应用。SEVA-DB 提供的核心构建体集合已作为进一步扩展格式化载体平台的起点生产。我们认为,采用 SEVA 格式可以成为填补现有 DNA 合成能力与可预测和有效的细菌实际工程之间显著差距的捷径。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8ad6/3531073/829992b9b3fd/gks1119f1p.jpg

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