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SEVA 4.0:标准欧洲载体架构数据库的更新,用于细菌表型的高级分析和编程。

SEVA 4.0: an update of the Standard European Vector Architecture database for advanced analysis and programming of bacterial phenotypes.

机构信息

Systems Biology Department, Centro Nacional de Biotecnología (CNB-CSIC), 28049 Cantoblanco-Madrid, Spain.

Scienseed SL, 28020 Madrid,Spain.

出版信息

Nucleic Acids Res. 2023 Jan 6;51(D1):D1558-D1567. doi: 10.1093/nar/gkac1059.

Abstract

The SEVA platform (https://seva-plasmids.com) was launched one decade ago, both as a database (DB) and as a physical repository of plasmid vectors for genetic analysis and engineering of Gram-negative bacteria with a structure and nomenclature that follows a strict, fixed architecture of functional DNA segments. While the current update keeps the basic features of earlier versions, the platform has been upgraded not only with many more ready-to-use plasmids but also with features that expand the range of target species, harmonize DNA assembly methods and enable new applications. In particular, SEVA 4.0 includes (i) a sub-collection of plasmids for easing the composition of multiple DNA segments with MoClo/Golden Gate technology, (ii) vectors for Gram-positive bacteria and yeast and [iii] off-the-shelf constructs with built-in functionalities. A growing collection of plasmids that capture part of the standard-but not its entirety-has been compiled also into the DB and repository as a separate corpus (SEVAsib) because of its value as a resource for constructing and deploying phenotypes of interest. Maintenance and curation of the DB were accompanied by dedicated diffusion and communication channels that make the SEVA platform a popular resource for genetic analyses, genome editing and bioengineering of a large number of microorganisms.

摘要

SEVA 平台(https://seva-plasmids.com)于十年前推出,既是一个数据库(DB),也是一个质粒载体的物理储存库,用于遗传分析和革兰氏阴性细菌的工程改造,其结构和命名法遵循严格、固定的功能 DNA 片段架构。虽然当前的更新保留了早期版本的基本功能,但该平台不仅增加了更多现成的质粒,还增加了一些功能,扩大了目标物种的范围,协调了 DNA 组装方法,并实现了新的应用。特别是,SEVA 4.0 包括:(i) 用于简化使用 MoClo/Golden Gate 技术构建多个 DNA 片段的亚集质粒,(ii) 用于革兰氏阳性细菌和酵母的载体,以及 (iii) 带有内置功能的现成构建体。由于其作为构建和部署感兴趣表型的资源的价值,一部分标准质粒(但不是全部)也被编译到 DB 和储存库中,作为一个单独的集合体(SEVAsib)。DB 的维护和管理伴随着专门的传播和沟通渠道,使 SEVA 平台成为许多微生物的遗传分析、基因组编辑和生物工程的热门资源。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/84ce/9825617/7a88b96db542/gkac1059fig1.jpg

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