Suppr超能文献

肠球菌接合蛋白 TraM 的 2.5 Å 结构类似于 VirB8 型 IV 型分泌蛋白。

The 2.5 Å structure of the enterococcus conjugation protein TraM resembles VirB8 type IV secretion proteins.

机构信息

Karl-Franzens-University Graz, Institute of Molecular Biosciences, Structural Biology, 8010 Graz, Austria.

出版信息

J Biol Chem. 2013 Jan 18;288(3):2018-28. doi: 10.1074/jbc.M112.428847. Epub 2012 Nov 27.

Abstract

Conjugative plasmid transfer is the most important means of spreading antibiotic resistance and virulence genes among bacteria and therefore presents a serious threat to human health. The process requires direct cell-cell contact made possible by a multiprotein complex that spans cellular membranes and serves as a channel for macromolecular secretion. Thus far, well studied conjugative type IV secretion systems (T4SS) are of Gram-negative (G-) origin. Although many medically relevant pathogens (e.g., enterococci, staphylococci, and streptococci) are Gram-positive (G+), their conjugation systems have received little attention. This study provides structural information for the transfer protein TraM of the G+ broad host range Enterococcus conjugative plasmid pIP501. Immunolocalization demonstrated that the protein localizes to the cell wall. We then used opsonophagocytosis as a novel tool to verify that TraM was exposed on the cell surface. In these assays, antibodies generated to TraM recruited macrophages and enabled killing of pIP501 harboring Enteroccocus faecalis cells. The crystal structure of the C-terminal, surface-exposed domain of TraM was determined to 2.5 Å resolution. The structure, molecular dynamics, and cross-linking studies indicated that a TraM trimer acts as the biological unit. Despite the absence of sequence-based similarity, TraM unexpectedly displayed a fold similar to the T4SS VirB8 proteins from Agrobacterium tumefaciens and Brucella suis (G-) and to the transfer protein TcpC from Clostridium perfringens plasmid pCW3 (G+). Based on the alignments of secondary structure elements of VirB8-like proteins from mobile genetic elements and chromosomally encoded T4SS from G+ and G- bacteria, we propose a new classification scheme of VirB8-like proteins.

摘要

共轭质粒转移是细菌中抗生素耐药性和毒力基因传播的最重要手段,因此对人类健康构成严重威胁。该过程需要通过跨越细胞膜的多蛋白复合物进行直接的细胞间接触,该复合物充当大分子分泌的通道。迄今为止,研究得很好的共轭 IV 型分泌系统 (T4SS) 源自革兰氏阴性 (G-)。尽管许多与医学相关的病原体(例如肠球菌、葡萄球菌和链球菌)是革兰氏阳性 (G+),但其共轭系统却很少受到关注。本研究提供了革兰氏阳性广泛宿主范围肠球菌共轭质粒 pIP501 的转移蛋白 TraM 的结构信息。免疫定位表明该蛋白定位于细胞壁。然后,我们使用调理吞噬作用作为一种新工具来验证 TraM 暴露在细胞表面上。在这些测定中,针对 TraM 产生的抗体募集了巨噬细胞,并使携带 pIP501 的肠球菌粪肠球菌细胞被杀死。TraM 的 C 端表面暴露结构域的晶体结构确定为 2.5 Å 分辨率。结构,分子动力学和交联研究表明,三聚体 TraM 作为生物单位起作用。尽管没有基于序列的相似性,但 TraM 出人意料地显示出与 Agrobacterium tumefaciens 和 Brucella suis (G-) 的 T4SS VirB8 蛋白以及 Clostridium perfringens 质粒 pCW3 的转移蛋白 TcpC (G+) 相似的折叠。基于移动遗传元件中的 VirB8 样蛋白和革兰氏阳性和革兰氏阴性细菌中染色体编码的 T4SS 的二级结构元件的比对,我们提出了一种新的 VirB8 样蛋白分类方案。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8da3/3548508/7b1320903ae5/zbc0061336940001.jpg

相似文献

1
The 2.5 Å structure of the enterococcus conjugation protein TraM resembles VirB8 type IV secretion proteins.
J Biol Chem. 2013 Jan 18;288(3):2018-28. doi: 10.1074/jbc.M112.428847. Epub 2012 Nov 27.
3
The type IV secretion protein TraK from the Enterococcus conjugative plasmid pIP501 exhibits a novel fold.
Acta Crystallogr D Biol Crystallogr. 2014 Apr;70(Pt 4):1124-35. doi: 10.1107/S1399004714001606. Epub 2014 Mar 21.
4
VirB8-like protein TraH is crucial for DNA transfer in Enterococcus faecalis.
Sci Rep. 2016 Apr 22;6:24643. doi: 10.1038/srep24643.
7
Structural Analysis and Inhibition of TraE from the pKM101 Type IV Secretion System.
J Biol Chem. 2016 Nov 4;291(45):23817-23829. doi: 10.1074/jbc.M116.753327. Epub 2016 Sep 15.
9
Conjugative type IV secretion systems in Gram-positive bacteria.
Plasmid. 2013 Nov;70(3):289-302. doi: 10.1016/j.plasmid.2013.09.005. Epub 2013 Oct 12.

引用本文的文献

3
Elucidating assembly and function of VirB8 cell wall subunits refines the DNA translocation model in Gram-positive T4SSs.
Sci Adv. 2025 Jan 24;11(4):eadq5975. doi: 10.1126/sciadv.adq5975. Epub 2025 Jan 22.
4
Small Things Matter: The 11.6-kDa TraB Protein is Crucial for Antibiotic Resistance Transfer Among Enterococci.
Front Mol Biosci. 2022 Apr 25;9:867136. doi: 10.3389/fmolb.2022.867136. eCollection 2022.
5
Structural and Biochemical Analysis of OrfG: The VirB8-like Component of the Conjugative Type IV Secretion System of ICE From .
Front Mol Biosci. 2021 Mar 18;8:642606. doi: 10.3389/fmolb.2021.642606. eCollection 2021.
6
Protein interactions within and between two F-type type IV secretion systems.
Mol Microbiol. 2020 Nov;114(5):823-838. doi: 10.1111/mmi.14582. Epub 2020 Aug 12.
8
TraN: A novel repressor of an Enterococcus conjugative type IV secretion system.
Nucleic Acids Res. 2018 Sep 28;46(17):9201-9219. doi: 10.1093/nar/gky671.
9
VirB8 homolog TraE from plasmid pKM101 forms a hexameric ring structure and interacts with the VirB6 homolog TraD.
Proc Natl Acad Sci U S A. 2018 Jun 5;115(23):5950-5955. doi: 10.1073/pnas.1802501115. Epub 2018 May 21.
10
Type IV secretion in Gram-negative and Gram-positive bacteria.
Mol Microbiol. 2018 Feb;107(4):455-471. doi: 10.1111/mmi.13896. Epub 2018 Jan 18.

本文引用的文献

1
GROMACS 4:  Algorithms for Highly Efficient, Load-Balanced, and Scalable Molecular Simulation.
J Chem Theory Comput. 2008 Mar;4(3):435-47. doi: 10.1021/ct700301q.
2
Identification of the binding site of Brucella VirB8 interaction inhibitors.
Chem Biol. 2012 Aug 24;19(8):1041-8. doi: 10.1016/j.chembiol.2012.07.007.
3
Disarming bacterial type IV secretion.
Chem Biol. 2012 Aug 24;19(8):934-6. doi: 10.1016/j.chembiol.2012.08.002.
4
Structure of the VirB4 ATPase, alone and bound to the core complex of a type IV secretion system.
Proc Natl Acad Sci U S A. 2012 Jul 10;109(28):11348-53. doi: 10.1073/pnas.1201428109. Epub 2012 Jun 27.
5
Plasmid-mediated horizontal gene transfer is a coevolutionary process.
Trends Microbiol. 2012 Jun;20(6):262-7. doi: 10.1016/j.tim.2012.04.003. Epub 2012 May 5.
6
Surface organelles assembled by secretion systems of Gram-negative bacteria: diversity in structure and function.
FEMS Microbiol Rev. 2012 Nov;36(6):1046-82. doi: 10.1111/j.1574-6976.2012.00342.x. Epub 2012 May 24.
8
Assembly and mechanisms of bacterial type IV secretion machines.
Philos Trans R Soc Lond B Biol Sci. 2012 Apr 19;367(1592):1073-87. doi: 10.1098/rstb.2011.0207.
9
Protection against Staphylococcus aureus by antibody to the polyglycerolphosphate backbone of heterologous lipoteichoic acid.
J Infect Dis. 2012 Apr 1;205(7):1076-85. doi: 10.1093/infdis/jis022. Epub 2012 Feb 23.

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验