Laboratory of Molecular Biology, National Institute of Diabetes and Digestive and Kidney Diseases, National Institutes of Health, Bethesda, MD 20892, USA.
Q Rev Biophys. 2012 Nov;45(4):493-521. doi: 10.1017/S0033583512000145.
DNA transposases are enzymes that catalyze the movement of discrete pieces of DNA from one location in the genome to another. Transposition occurs through a series of controlled DNA strand cleavage and subsequent integration reactions that are carried out by nucleoprotein complexes known as transpososomes. Transpososomes are dynamic assemblies which must undergo conformational changes that control DNA breaks and ensure that, once started, the transposition reaction goes to completion. They provide a precise architecture within which the chemical reactions involved in transposon movement occur, but adopt different conformational states as transposition progresses. Their components also vary as they must, at some stage, include target DNA and sometimes even host-encoded proteins. A very limited number of transpososome states have been crystallographically captured, and here we provide an overview of the various structures determined to date. These structures include examples of DNA transposases that catalyze transposition by a cut-and-paste mechanism using an RNaseH-like nuclease catalytic domain, those that transpose using only single-stranded DNA substrates and targets, and the retroviral integrases that carry out an integration reaction very similar to DNA transposition. Given that there are a number of common functional requirements for transposition, it is remarkable how these are satisfied by complex assemblies that are so architecturally different.
DNA 转座酶是一种能够催化 DNA 从基因组的一个位置转移到另一个位置的酶。转座通过一系列受控的 DNA 链切割和随后的整合反应来实现,这些反应是由核蛋白复合物(称为转座体)执行的。转座体是动态组装体,必须经历构象变化来控制 DNA 断裂,并确保一旦开始,转位反应就会完成。它们提供了一个精确的结构,其中涉及转座子运动的化学反应发生,但随着转位的进展,它们会采用不同的构象状态。它们的组成部分也会发生变化,因为它们必须在某个阶段包括靶 DNA,有时甚至包括宿主编码的蛋白质。只有非常有限数量的转座体状态已经通过晶体学捕获,在这里我们提供了迄今为止确定的各种结构的概述。这些结构包括通过使用 RNaseH 样核酸酶催化结构域进行“切-接”机制催化转位的 DNA 转座酶的例子,那些仅使用单链 DNA 底物和靶标进行转位的例子,以及进行与 DNA 转位非常相似的整合反应的逆转录病毒整合酶。鉴于转位有许多共同的功能要求,令人惊讶的是,这些要求是如何通过如此不同的结构的复杂组装来满足的。