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体外进化产生的原始催化折叠的结构与动力学。

Structure and dynamics of a primordial catalytic fold generated by in vitro evolution.

机构信息

Department of Biochemistry, Molecular Biology and Biophysics, University of Minnesota, Minneapolis, Minnesota, USA.

出版信息

Nat Chem Biol. 2013 Feb;9(2):81-3. doi: 10.1038/nchembio.1138. Epub 2012 Dec 9.

DOI:10.1038/nchembio.1138
PMID:23222886
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3552148/
Abstract

Engineering functional protein scaffolds capable of carrying out chemical catalysis is a major challenge in enzyme design. Starting from a noncatalytic protein scaffold, we recently generated a new RNA ligase by in vitro directed evolution. This artificial enzyme lost its original fold and adopted an entirely new structure with substantially enhanced conformational dynamics, demonstrating that a primordial fold with suitable flexibility is sufficient to carry out enzymatic function.

摘要

工程化具有化学催化功能的蛋白质支架是酶设计的主要挑战。我们最近从非催化蛋白支架出发,通过体外定向进化生成了一种新的 RNA 连接酶。这种人工酶失去了原有的折叠结构,采用了一种全新的结构,构象动力学大大增强,这表明具有适当灵活性的原始折叠足以执行酶功能。

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Novel proteins: from fold to function.新型蛋白质:从折叠到功能。
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mRNA display for the selection and evolution of enzymes from in vitro-translated protein libraries.mRNA 展示用于从体外翻译的蛋白质文库中选择和进化酶。
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Nature-inspired engineering of an artificial ligase enzyme by domain fusion.受自然启发的通过结构域融合进行人工连接酶的工程设计。
Nucleic Acids Res. 2022 Oct 28;50(19):11175-11185. doi: 10.1093/nar/gkac858.
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Peptides before and during the nucleotide world: an origins story emphasizing cooperation between proteins and nucleic acids.在核苷酸世界之前和期间的肽:强调蛋白质和核酸之间合作的起源故事。
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