Department of Biochemistry, Stanford University Medical Center, Stanford, CA 94305-5307, United States.
Curr Opin Struct Biol. 2013 Feb;23(1):4-10. doi: 10.1016/j.sbi.2012.11.004. Epub 2012 Dec 10.
The exquisite side chain close-packing in the protein core and at binding interfaces has prompted a conviction that packing selectivity is the primary mechanism for molecular recognition in folding and/or binding reactions. Contrary to this view, molten globule proteins can adopt native topology and bind targets tightly and specifically in the absence of side chain close-packing. The molten globule is a highly dynamic form with native-like secondary structure and a loose protein core that admits solvent. The related (but still controversial) dry molten globule is an expanded form of the native protein with largely intact topology but a tighter protein core that excludes solvent. Neither form retains side chain close-packing, and therefore both structure and function must result from other factors, assuming that the reality of the dry molten globule is accepted. This simplifying realization calls for a re-evaluation of established models.
蛋白质核心和结合界面处精细的侧链堆积促使人们相信,在折叠和/或结合反应中,堆积选择性是分子识别的主要机制。与这种观点相反,无侧链堆积的熔融球蛋白可以采用天然拓扑结构并紧密、特异性地结合靶标。熔融球蛋白是一种高度动态的形式,具有类似天然的二级结构和允许溶剂进入的松散蛋白质核心。相关的(但仍有争议的)干燥熔融球蛋白是天然蛋白质的扩展形式,具有基本完整的拓扑结构,但蛋白质核心更紧,溶剂被排除在外。这两种形式都不保留侧链堆积,因此,假定干燥熔融球蛋白的现实存在,结构和功能都必须来自其他因素。这种简化的认识要求重新评估已建立的模型。