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2
Energetics of direct and water-mediated proton-coupled electron transfer.直接质子耦合电子转移和水介导质子耦合电子转移的能量学。
J Am Chem Soc. 2011 Nov 30;133(47):19040-3. doi: 10.1021/ja2082262. Epub 2011 Nov 9.
3
Electronic coupling matrix elements from charge constrained density functional theory calculations using a plane wave basis set.基于平面波基组的电荷约束密度泛函理论计算的电子耦合矩阵元。
J Chem Phys. 2010 Dec 28;133(24):244105. doi: 10.1063/1.3507878.
4
Prediction of reorganization free energies for biological electron transfer: a comparative study of Ru-modified cytochromes and a 4-helix bundle protein.预测生物电子转移的无重组自由能:Ru 修饰细胞色素和 4 螺旋束蛋白的比较研究。
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Insight into the mechanism of the Ru2+-Ru3+ electron self-exchange reaction from quantitative rate calculations.通过定量速率计算深入了解Ru2+-Ru3+电子自交换反应的机理。
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关于线性自由能关系的起源:探索双分子亲核取代反应中非对角耦合元素的本质

On the Origins of the Linear Free Energy Relationships: Exploring the Nature of the Off-Diagonal Coupling Elements in S(N)2 Reactions.

作者信息

Rosta Edina, Warshel Arieh

机构信息

Laboratory of Chemical Physics, National Institute of Diabetes and Digestive and Kidney Diseases, National Institutes of Health, Bethesda, Maryland 20892-0520 ; Department of Chemistry, King's College London, London, SE1 1UL, UK.

出版信息

J Chem Theory Comput. 2012;8(10):3574-3585. doi: 10.1021/ct2009329. Epub 2012 Mar 29.

DOI:10.1021/ct2009329
PMID:23329895
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3544163/
Abstract

Understanding the relationship between the adiabatic free energy profiles of chemical reactions and the underlining diabatic states is central to the description of chemical reactivity. The diabatic states form the theoretical basis of Linear Free Energy Relationships (LFERs) and thus play a major role in physical organic chemistry and related fields. However, the theoretical justification for some of the implicit LFER assumptions has not been fully established by quantum mechanical studies. This study follows our earlier works(1,2) and uses the ab initio frozen density functional theory (FDFT) method(3) to evaluate both the diabatic and adiabatic free energy surfaces and to determine the corresponding off-diagonal coupling matrix elements for a series of S(N)2 reactions. It is found that the off-diagonal coupling matrix elements are almost the same regardless of the nucleophile and the leaving group but change upon changing the central group. Furthermore, it is also found that the off diagonal elements are basically the same in gas phase and in solution, even when the solvent is explicitly included in the ab initio calculations. Furthermore, our study establishes that the FDFT diabatic profiles are parabolic to a good approximation thus providing a first principle support to the origin of LFER. These findings further support the basic approximation of the EVB treatment.

摘要

理解化学反应的绝热自由能分布与潜在的非绝热态之间的关系是描述化学反应活性的核心。非绝热态构成了线性自由能关系(LFERs)的理论基础,因此在物理有机化学及相关领域中发挥着重要作用。然而,一些隐含的LFER假设的理论依据尚未通过量子力学研究完全确立。本研究延续我们早期的工作(1,2),并使用从头算冻结密度泛函理论(FDFT)方法(3)来评估非绝热和绝热自由能表面,并确定一系列S(N)2反应的相应非对角耦合矩阵元。研究发现,无论亲核试剂和离去基团如何,非对角耦合矩阵元几乎相同,但随着中心基团的变化而改变。此外,还发现即使在从头算计算中明确包含溶剂,非对角元素在气相和溶液中基本相同。此外,我们的研究表明,FDFT非绝热分布在很好的近似下是抛物线形的,从而为LFER的起源提供了第一性原理支持。这些发现进一步支持了EVB处理的基本近似。