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真核生物 α-葡糖苷酶的进化历史来自于 α-淀粉酶家族。

Evolutionary history of eukaryotic α-glucosidases from the α-amylase family.

机构信息

Laboratory of Protein Evolution, Institute of Molecular Biology, Slovak Academy of Sciences, Bratislava, Slovakia.

出版信息

J Mol Evol. 2013 Mar;76(3):129-45. doi: 10.1007/s00239-013-9545-4. Epub 2013 Feb 10.

DOI:10.1007/s00239-013-9545-4
PMID:23397242
Abstract

Although some α-glucosidases from the α-amylase family (glycoside hydrolase family GH13) have been studied extensively, their exact number, organization on the chromosome, and orthology/paralogy relationship were unknown. This was true even for important disease vectors where gut α-glucosidase is known to be receptor for the Bin toxin used to control the population of some mosquito species. In some cases orthologs from related species were studied intensively, while potentially important paralogs were omitted. We have, therefore, used a bioinformatics approach to identify all family GH13 α-glucosidases from the selected species from Metazoa (including three mosquito species: Aedes aegypti, Anopheles gambiae, and Culex quinquefasciatus) as well as from Fungi in an effort to characterize their arrangement on the chromosome and evolutionary relationships among orthologs and among paralogs. We also searched for pseudogenes and genes coding for enzymatically inactive proteins with a possible new function. We have found GH13 α-glucosidases mostly in Arthropoda and Fungi where they form gene families, as a result of multiple lineage-specific gene duplications. In mosquito species we have identified 14 α-glucosidase (Aglu) genes of which only five have been biochemically characterized so far, two are putative pseudogenes and the rest remains uncharacterized. We also revealed quite a complex evolutionary history of the eukaryotic α-glucosidases probably involving multiple losses of genes or horizontal gene transfer from bacteria.

摘要

虽然一些来自 α-淀粉酶家族(糖苷水解酶家族 GH13)的α-葡萄糖苷酶已经被广泛研究,但它们的确切数量、在染色体上的组织以及同源/旁系关系仍然未知。即使对于重要的疾病载体也是如此,已知肠道α-葡萄糖苷酶是用于控制某些蚊子物种数量的 Bin 毒素的受体。在某些情况下,来自相关物种的同源物被 intensively 研究,而潜在重要的旁系物则被忽略。因此,我们使用生物信息学方法从 Metazoa(包括三种蚊子:埃及伊蚊、冈比亚按蚊和库蚊)和真菌中鉴定出所选物种的所有家族 GH13 α-葡萄糖苷酶,以努力描述它们在染色体上的排列以及同源物和旁系物之间的进化关系。我们还搜索了假基因和编码可能具有新功能的无酶活性蛋白的基因。我们发现 GH13 α-葡萄糖苷酶主要存在于节肢动物和真菌中,它们形成基因家族,这是由于多个谱系特异性基因复制的结果。在蚊子中,我们已经鉴定出 14 种α-葡萄糖苷酶(Aglu)基因,其中只有 5 种迄今为止已经进行了生化表征,其中两种是假定的假基因,其余的尚未表征。我们还揭示了真核生物α-葡萄糖苷酶相当复杂的进化历史,可能涉及多个基因的丢失或来自细菌的水平基因转移。

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