迈向对假单胞菌属菌株M1基因组目录的描述
Towards the Description of the Genome Catalogue of Pseudomonas sp. Strain M1.
作者信息
Soares-Castro Pedro, Santos Pedro M
机构信息
CBMA, Center of Molecular and Environmental Biology, Department of Biology, University of Minho, Campus de Gualtar, Braga, Portugal.
出版信息
Genome Announc. 2013 Jan;1(1). doi: 10.1128/genomeA.00146-12. Epub 2013 Feb 7.
Abstract
Pseudomonas sp. strain M1 is a soil isolate with remarkable biotechnological potential. The genome of Pseudomonas sp. M1 was sequenced using both 454 and Illumina technologies. A customized genome assembly pipeline was used to reconstruct its genome sequence to a single scaffold.
摘要
假单胞菌属菌株M1是一种从土壤中分离出来的具有显著生物技术潜力的菌株。使用454和Illumina技术对假单胞菌属M1的基因组进行了测序。采用定制的基因组组装流程将其基因组序列重建为单个支架。
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Bioinformatics. 2011 Feb 15;27(4):578-9. doi: 10.1093/bioinformatics/btq683. Epub 2010 Dec 12.
3
The sequence and de novo assembly of the giant panda genome.大熊猫基因组的序列与从头组装。
Nature. 2010 Jan 21;463(7279):311-7. doi: 10.1038/nature08696. Epub 2009 Dec 13.
4
Adaptation to beta-myrcene catabolism in Pseudomonas sp. M1: an expression proteomics analysis.假单胞菌 M1 对β-月桂烯代谢的适应：表达蛋白质组学分析。
Proteomics. 2009 Nov;9(22):5101-11. doi: 10.1002/pmic.200900325.
5
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6
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J Biotechnol. 2007 Sep 30;131(4):371-8. doi: 10.1016/j.jbiotec.2007.07.941. Epub 2007 Jul 26.
7
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Nature. 2005 Sep 15;437(7057):376-80. doi: 10.1038/nature03959. Epub 2005 Jul 31.
8
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