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渐生利氏杆菌BT-1全基因组序列

Complete genome sequence of Liberibacter crescens BT-1.

作者信息

Leonard Michael T, Fagen Jennie R, Davis-Richardson Austin G, Davis Michael J, Triplett Eric W

机构信息

Microbiology and Cell Science Department, Institute of Food and Agricultural Sciences, University of Florida, Gainesville, FL, USA.

出版信息

Stand Genomic Sci. 2012 Dec 19;7(2):271-83. doi: 10.4056/sigs.3326772. Epub 2012 Dec 12.

DOI:10.4056/sigs.3326772
PMID:23408754
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3569387/
Abstract

Liberibacter crescens BT-1, a Gram-negative, rod-shaped bacterial isolate, was previously recovered from mountain papaya to gain insight on Huanglongbing (HLB) and Zebra Chip (ZC) diseases. The genome of BT-1 was sequenced at the Interdisciplinary Center for Biotechnology Research (ICBR) at the University of Florida. A finished assembly and annotation yielded one chromosome with a length of 1,504,659 bp and a G+C content of 35.4%. Comparison to other species in the Liberibacter genus, L. crescens has many more genes in thiamine and essential amino acid biosynthesis. This likely explains why L. crescens BT-1 is culturable while the known Liberibacter strains have not yet been cultured. Similar to CandidatusL. asiaticus psy62, the L. crescens BT-1 genome contains two prophage regions.

摘要

渐生利氏菌BT-1是一种革兰氏阴性、杆状细菌分离株,此前从山地番木瓜中分离出来,用于深入了解黄龙病(HLB)和斑马木薯病(ZC)。BT-1的基因组在佛罗里达大学的跨学科生物技术研究中心(ICBR)进行了测序。完成的组装和注释产生了一条长度为1,504,659 bp、G+C含量为35.4%的染色体。与利氏菌属的其他物种相比,渐生利氏菌在硫胺素和必需氨基酸生物合成方面有更多基因。这可能解释了为什么渐生利氏菌BT-1可培养,而已知的利氏菌菌株尚未培养成功。与亚洲韧皮杆菌psy62类似,渐生利氏菌BT-1基因组包含两个原噬菌体区域。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fd89/3569387/362a41b96c35/sigs.3326772-f4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fd89/3569387/ca8cfeda52de/sigs.3326772-f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fd89/3569387/974746b63827/sigs.3326772-f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fd89/3569387/e2da9440e0e7/sigs.3326772-f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fd89/3569387/ea0242cb99e8/sigs.3326772-f5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fd89/3569387/362a41b96c35/sigs.3326772-f4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fd89/3569387/ca8cfeda52de/sigs.3326772-f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fd89/3569387/974746b63827/sigs.3326772-f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fd89/3569387/e2da9440e0e7/sigs.3326772-f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fd89/3569387/ea0242cb99e8/sigs.3326772-f5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fd89/3569387/362a41b96c35/sigs.3326772-f4.jpg

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本文引用的文献

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Plant Dis. 2008 Nov;92(11):1547-1550. doi: 10.1094/PDIS-92-11-1547.
2
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Int J Syst Evol Microbiol. 2014 Jul;64(Pt 7):2461-2466. doi: 10.1099/ijs.0.063255-0. Epub 2014 Apr 30.
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Hybrid error correction and de novo assembly of single-molecule sequencing reads.
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Sci Rep. 2024 Sep 2;14(1):20306. doi: 10.1038/s41598-024-70499-z.
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Sci Rep. 2024 Aug 2;14(1):17972. doi: 10.1038/s41598-024-66352-y.
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Integrated bacterial transcriptome and host metabolome analysis reveals insights into " Liberibacter asiaticus" population dynamics in the fruit pith of three citrus cultivars with different tolerance.综合细菌转录组和宿主代谢组分析揭示了不同耐性的三种柑橘品种果实髓部中“亚洲韧皮杆菌”种群动态的见解。
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