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Patterns of diversity for fungal assemblages of biological soil crusts from the southwestern United States.美国西南部生物土壤结皮真菌组合的多样性模式。
Mycologia. 2012 Mar-Apr;104(2):353-61. doi: 10.3852/11-232. Epub 2011 Nov 28.
2
Patterns of fungal diversity and composition along a salinity gradient.真菌多样性和组成沿盐度梯度的模式。
ISME J. 2011 Mar;5(3):379-88. doi: 10.1038/ismej.2010.137. Epub 2010 Sep 30.
3
Spatial scaling of arbuscular mycorrhizal fungal diversity is affected by farming practice.丛枝菌根真菌多样性的空间尺度受到农业实践的影响。
Environ Microbiol. 2011 Jan;13(1):241-249. doi: 10.1111/j.1462-2920.2010.02326.x. Epub 2010 Sep 14.
4
A simple method of genomic DNA extraction suitable for analysis of bulk fungal strains.一种适用于大量真菌菌株分析的基因组 DNA 提取的简单方法。
Lett Appl Microbiol. 2010 Jul;51(1):114-8. doi: 10.1111/j.1472-765X.2010.02867.x. Epub 2010 May 14.
5
Bacterial diversity and biogeography in deep-sea surface sediments of the South Atlantic Ocean.南大西洋深海表层沉积物中的细菌多样性及其生物地理学分布。
ISME J. 2010 Feb;4(2):159-70. doi: 10.1038/ismej.2009.106. Epub 2009 Oct 15.
6
454 Pyrosequencing analyses of forest soils reveal an unexpectedly high fungal diversity.454 pyrosequencing 分析森林土壤揭示了出人意料的高真菌多样性。
New Phytol. 2009 Oct;184(2):449-456. doi: 10.1111/j.1469-8137.2009.03003.x. Epub 2009 Aug 22.
7
Microbial biogeography of six salt lakes in Inner Mongolia, China, and a salt lake in Argentina.中国内蒙古六个盐湖及阿根廷一个盐湖的微生物生物地理学
Appl Environ Microbiol. 2009 Sep;75(18):5750-60. doi: 10.1128/AEM.00040-09. Epub 2009 Jul 31.
8
Microbial community structure and its functional implications.微生物群落结构及其功能意义。
Nature. 2009 May 14;459(7244):193-9. doi: 10.1038/nature08058.
9
History and evolution of alpine plants endemic to the Qinghai-Tibetan Plateau: Aconitum gymnandrum (Ranunculaceae).青藏高原特有高山植物甘青青兰(毛茛科)的历史与演化
Mol Ecol. 2009 Feb;18(4):709-21. doi: 10.1111/j.1365-294X.2008.04055.x. Epub 2009 Jan 16.
10
Fungal diversity in the rhizosphere of endemic plant species of Tenerife (Canary Islands): relationship to vegetation zones and environmental factors.特内里费岛(加那利群岛)特有植物物种根际的真菌多样性:与植被带和环境因素的关系。
ISME J. 2009 Jan;3(1):79-92. doi: 10.1038/ismej.2008.87. Epub 2008 Oct 2.

中国长江流域及其他地区湿地沉积物中真菌群落的生物地理学研究。

The biogeography of fungal communities in wetland sediments along the Changjiang River and other sites in China.

机构信息

State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, Beijing, China.

出版信息

ISME J. 2013 Jul;7(7):1299-309. doi: 10.1038/ismej.2013.29. Epub 2013 Feb 28.

DOI:10.1038/ismej.2013.29
PMID:23446835
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3695295/
Abstract

Whether fungal community structure depends more on historical factors or on contemporary factors is controversial. This study used culture-dependent and -independent (polymerase chain reaction-denaturing gradient gel electrophoresis (PCR-DGGE)) methods to assess the influence of historical and contemporary factors on the distributions of fungi in the wetland sediments at 10 locations along the Changjiang River and at 10 other locations in China. The culture-dependent approach detected greater species diversity (177 operational taxonomic units (OTUs)) than PCR-DGGE analysis (145 OTUs), and the species in the genera of Penicillium (relative frequency=16.8%), Fusarium (15.4%), Aspergillus (7.6%), Trichoderma (5.8%) and Talaromyces (4.2%) were dominant. On the basis of DGGE data, fungal diversity along the Changjiang River increased from upstream to downstream; altitude explained 44.8% of this variation in diversity. And based on the data from all 20 locations, the fungal communities were geographically clustered into three groups: Southern China, Northern China and the Qinghai-Tibetan Plateau. Multivariate regression tree analysis for data from the 20 locations indicated that the fungal community was influenced primarily by location (which explained 61.8% of the variation at a large scale), followed by total potassium (9.4%) and total nitrogen (3.5%) at a local scale. These results are consistent with the concept that geographic distance is the dominant factor driving variation in fungal diversity at a regional scale (1000-4000 km), whereas environmental factors (total potassium and total nitrogen) explain variation in fungal diversity at a local scale (<1000 km).

摘要

真菌群落结构是更多地取决于历史因素还是当代因素,这一点存在争议。本研究采用培养依赖和非依赖(聚合酶链反应-变性梯度凝胶电泳(PCR-DGGE))方法,评估了历史和当代因素对长江沿线 10 个地点和中国其他 10 个地点湿地沉积物中真菌分布的影响。培养依赖方法检测到的物种多样性(177 个操作分类单元(OTUs))高于 PCR-DGGE 分析(145 OTUs),并且在Penicillium(相对频率=16.8%)、Fusarium(15.4%)、Aspergillus(7.6%)、Trichoderma(5.8%)和Talaromyces(4.2%)属中发现的物种占优势。基于 DGGE 数据,真菌多样性沿长江从上游到下游增加;海拔高度解释了这种多样性变化的 44.8%。并且基于来自所有 20 个地点的数据,真菌群落按地理位置聚类为三个组:中国南方、中国北方和青藏高原。对来自 20 个地点的数据进行多元回归树分析表明,真菌群落主要受地点(在大尺度上解释了 61.8%的变异)影响,其次是总钾(9.4%)和总氮(3.5%)在小尺度上。这些结果与地理距离是驱动区域尺度(1000-4000 km)真菌多样性变化的主要因素的概念一致,而环境因素(总钾和总氮)解释了小尺度(<1000 km)真菌多样性的变化。