Shanghai Key Laboratory of Forensic Medicine, Institute of Forensic Sciences, Ministry of Justice, Shanghai, People's Republic of China.
PLoS One. 2013;8(2):e57471. doi: 10.1371/journal.pone.0057471. Epub 2013 Feb 25.
This paper describes a newly devised autosomal short tandem repeat (STR) multiplex polymerase chain reaction (PCR) systems for 17 autosomal loci (D1S1656, D2S441, D3S1358, D3S3045, D6S477, D7S3048, D8S1132, D10S1435, D10S1248, D11S2368, D13S325, D14S608, D15S659, D17S1290, D18S535, D19S253 and D22-GATA198B05) and Amelogenin. Primers for the loci were designed and optimized so that all of the amplicons were distributed from 50 base pairs (bp) to less than 500 bp within a five-dye chemistry design with the fifth dye reserved for the sizing standard. Strategies were developed to overcome challenges that encountered in creating the final assay. The limits of the multiplex were tested, resulting in the successful amplification of genomic DNA range from 0.25-4 ng with 30 PCR cycles. A total of 681 individuals from the Chinese Han population were studied and forensic genetic data were present. No significant deviations from Hardy-Weinberg equilibrium were observed. A total of 180 alleles were detected for the 17 autosomal STRs. The cumulative mean exclusion chance in duos (CMECD) was 0.999967, and cumulative mean exclusion chance in trios (CMECT) was 0.99999995. We conclude that the present 17plex autosomal STRs assay provides an additional powerful tool for forensic applications.
本文描述了一种新设计的常染色体短串联重复序列(STR)复合聚合酶链反应(PCR)系统,用于 17 个常染色体基因座(D1S1656、D2S441、D3S1358、D3S3045、D6S477、D7S3048、D8S1132、D10S1435、D10S1248、D11S2368、D13S325、D14S608、D15S659、D17S1290、D18S535、D19S253 和 D22-GATA198B05)和 Amelogenin。这些基因座的引物经过设计和优化,使所有的扩增片段都分布在 50 个碱基对(bp)到 500bp 以下,采用五染料化学设计,第五染料保留用于大小标准。还制定了克服最终检测中遇到的挑战的策略。对多重检测的限制进行了测试,结果表明,在 30 个 PCR 循环中,成功扩增了从 0.25ng 到 4ng 的基因组 DNA。对来自中国汉族人群的 681 个人进行了研究,并提供了法医遗传学数据。没有观察到明显偏离 Hardy-Weinberg 平衡。在 17 个常染色体 STR 中,共检测到 180 个等位基因。在双生子中,累积平均排除概率(CMECD)为 0.999967,在三胞胎中,累积平均排除概率(CMECT)为 0.99999995。我们得出结论,目前的 17 个常染色体 STR 复合 PCR 系统为法医应用提供了一个额外的有力工具。