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核仁素介导 microRNA 指导的 CSF-1 mRNA 去腺苷酸化,但增加 CSF-1 mRNA 的翻译。

Nucleolin mediates microRNA-directed CSF-1 mRNA deadenylation but increases translation of CSF-1 mRNA.

机构信息

Arizona Cancer Center, University of Arizona, Tucson, Arizona 85724, USA.

出版信息

Mol Cell Proteomics. 2013 Jun;12(6):1661-77. doi: 10.1074/mcp.M112.025288. Epub 2013 Mar 7.

Abstract

CSF-1 mRNA 3'UTR contains multiple unique motifs, including a common microRNA (miRNA) target in close proximity to a noncanonical G-quadruplex and AU-rich elements (AREs). Using a luciferase reporter system fused to CSF-1 mRNA 3'UTR, disruption of the miRNA target region, G-quadruplex, and AREs together dramatically increased reporter RNA levels, suggesting important roles for these cis-acting regulatory elements in the down-regulation of CSF-1 mRNA. We find that nucleolin, which binds both G-quadruplex and AREs, enhances deadenylation of CSF-1 mRNA, promoting CSF-1 mRNA decay, while having the capacity to increase translation of CSF-1 mRNA. Through interaction with the CSF-1 3'UTR miRNA common target, we find that miR-130a and miR-301a inhibit CSF-1 expression by enhancing mRNA decay. Silencing of nucleolin prevents the miRNA-directed mRNA decay, indicating a requirement for nucleolin in miRNA activity on CSF-1 mRNA. Downstream effects followed by miR-130a and miR-301a inhibition of directed cellular motility of ovarian cancer cells were found to be dependent on nucleolin. The paradoxical effects of nucleolin on miRNA-directed CSF-1 mRNA deadenylation and on translational activation were explored further. The nucleolin protein contains four acidic stretches, four RNA recognition motifs (RRMs), and nine RGG repeats. All three domains in nucleolin regulate CSF-1 mRNA and protein levels. RRMs increase CSF-1 mRNA, whereas the acidic and RGG domains decrease CSF-1 protein levels. This suggests that nucleolin has the capacity to differentially regulate both CSF-1 RNA and protein levels. Our finding that nucleolin interacts with Ago2 indirectly via RNA and with poly(A)-binding protein C (PABPC) directly suggests a nucleolin-Ago2-PABPC complex formation on mRNA. This complex is in keeping with our suggestion that nucleolin may work with PABPC as a double-edged sword on both mRNA deadenylation and translational activation. Our findings underscore the complexity of nucleolin's actions on CSF-1 mRNA and describe the dependence of miR-130a- and miR-301a-directed CSF-1 mRNA decay and inhibition of ovarian cancer cell motility on nucleolin.

摘要

CSF-1 mRNA 3'UTR 包含多个独特的基序,包括紧邻非典型 G-四链体和富含 AU 的元件 (AREs) 的常见 microRNA (miRNA) 靶标。使用融合到 CSF-1 mRNA 3'UTR 的荧光素酶报告系统,破坏 miRNA 靶区、G-四链体和 AREs 一起可显著增加报告 RNA 水平,这表明这些顺式作用调节元件在 CSF-1 mRNA 的下调中起着重要作用。我们发现,结合 G-四链体和 AREs 的核仁蛋白可增强 CSF-1 mRNA 的脱腺苷酸化,促进 CSF-1 mRNA 衰变,同时具有增加 CSF-1 mRNA 翻译的能力。通过与 CSF-1 3'UTR miRNA 共同靶标相互作用,我们发现 miR-130a 和 miR-301a 通过增强 mRNA 衰变来抑制 CSF-1 的表达。核仁蛋白沉默可防止 miRNA 指导的 mRNA 衰变,表明核仁蛋白在 miRNA 对 CSF-1 mRNA 的活性中是必需的。miR-130a 和 miR-301a 抑制卵巢癌细胞定向细胞运动的下游效应被发现依赖于核仁蛋白。进一步探讨了核仁蛋白对 miRNA 指导的 CSF-1 mRNA 脱腺苷酸化和翻译激活的矛盾作用。核仁蛋白包含四个酸性伸展、四个 RNA 识别基序 (RRMs) 和九个 RGG 重复序列。核仁蛋白的所有三个结构域都调节 CSF-1 mRNA 和蛋白质水平。RRMs 增加 CSF-1 mRNA,而酸性和 RGG 结构域则降低 CSF-1 蛋白水平。这表明核仁蛋白具有调节 CSF-1 RNA 和蛋白质水平的能力。我们发现核仁蛋白通过 RNA 与 Ago2 间接相互作用,通过 poly(A)-结合蛋白 C (PABPC) 直接相互作用,表明在 mRNA 上形成核仁蛋白-Ago2-PABPC 复合物。这一复合物与我们的假设一致,即核仁蛋白可能与 PABPC 一起作为双刃剑,在 mRNA 脱腺苷酸化和翻译激活中发挥作用。我们的研究结果强调了核仁蛋白对 CSF-1 mRNA 作用的复杂性,并描述了 miR-130a 和 miR-301a 指导的 CSF-1 mRNA 衰变和抑制卵巢癌细胞运动对核仁蛋白的依赖性。

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