粘质沙雷氏菌WW4的全基因组序列
Complete Genome Sequence of Serratia marcescens WW4.
作者信息
Chung Wan-Chia, Chen Ling-Ling, Lo Wen-Sui, Kuo Pei-An, Tu Jenn, Kuo Chih-Horng
机构信息
Institute of Plant and Microbial Biology, Academia Sinica, Taipei, Taiwan.
出版信息
Genome Announc. 2013 Apr 4;1(2):e0012613. doi: 10.1128/genomeA.00126-13.
Abstract
Serratia marcescens WW4 is a biofilm-forming bacterium isolated from paper machine aggregates. Under conditions of phosphate limitation, this bacterium exhibits intergeneric inhibition of Pseudomonas aeruginosa. Here, the complete genome sequence of S. marcescens WW4, which consists of one circular chromosome (5,241,455 bp) and one plasmid (pSmWW4; 3,248 bp), was determined.
摘要
粘质沙雷氏菌WW4是一种从造纸机聚集体中分离出的具有生物膜形成能力的细菌。在磷酸盐限制条件下，该细菌对铜绿假单胞菌表现出属间抑制作用。在此，我们测定了粘质沙雷氏菌WW4的完整基因组序列，它由一条环状染色体（5,241,455 bp）和一个质粒（pSmWW4；3,248 bp）组成。
相似文献
1
Complete Genome Sequence of Serratia marcescens WW4.粘质沙雷氏菌WW4的全基因组序列
Genome Announc. 2013 Apr 4;1(2):e0012613. doi: 10.1128/genomeA.00126-13.
2
Phosphate limitation induces the intergeneric inhibition of Pseudomonas aeruginosa by Serratia marcescens isolated from paper machines.磷酸盐限制诱导了来自造纸机的粘质沙雷氏菌对铜绿假单胞菌的种间抑制。
FEMS Microbiol Ecol. 2013 Jun;84(3):577-87. doi: 10.1111/1574-6941.12086. Epub 2013 Mar 11.
3
Complete Genome Sequence of the Bacterium Serratia marcescens SGAir0764, Isolated from Singapore Air.从新加坡空气分离出的粘质沙雷氏菌SGAir0764的全基因组序列
Genome Announc. 2018 Jul 5;6(27):e00637-18. doi: 10.1128/genomeA.00637-18.
4
Complete genome sequence of D1_6, isolated from peat soil.从泥炭土中分离出的D1_6的全基因组序列。
Microbiol Resour Announc. 2024 Nov 12;13(11):e0029924. doi: 10.1128/mra.00299-24. Epub 2024 Sep 23.
5
Long-Chain 4-Aminoquinolines as Quorum Sensing Inhibitors in Serratia marcescens and Pseudomonas aeruginosa.长链4-氨基喹啉作为粘质沙雷氏菌和铜绿假单胞菌群体感应抑制剂
ACS Chem Biol. 2017 May 19;12(5):1425-1434. doi: 10.1021/acschembio.6b01149. Epub 2017 Apr 10.
6
Draft Genome Sequence of Heavy Metal-Resistant Soil Bacterium S2I7, Which Has the Ability To Degrade Polyaromatic Hydrocarbons.具有降解多环芳烃能力的重金属抗性土壤细菌S2I7的基因组序列草图
Genome Announc. 2017 Nov 30;5(48):e01338-17. doi: 10.1128/genomeA.01338-17.
7
Distribution and Genetic Diversity of Genes Involved in Quorum Sensing and Prodigiosin Biosynthesis in the Complete Genome Sequences of Serratia marcescens.在粘质沙雷氏菌全基因组序列中参与群体感应和灵菌红素生物合成的基因的分布和遗传多样性。
Genome Biol Evol. 2019 Mar 1;11(3):931-936. doi: 10.1093/gbe/evz046.
8
Complete Genome Sequence of Serratia marcescens FY, Isolated from Drosophila melanogaster.从黑腹果蝇中分离得到的粘质沙雷氏菌FY的全基因组序列
Microbiol Resour Announc. 2020 Nov 5;9(45):e00755-20. doi: 10.1128/MRA.00755-20.
9
Complete genome sequence of the biocontrol agent Serratia marcescens strain N4-5 uncovers an assembly artefact.生防菌粘质沙雷氏菌 N4-5 全基因组序列揭示了一个组装假象。
Braz J Microbiol. 2021 Mar;52(1):245-250. doi: 10.1007/s42770-020-00382-2. Epub 2020 Sep 23.
10
Complete Genome Sequence of Temperature-Dependent Pigment-Producing Serratia marcescens ATCC 274.温度依赖性产色素粘质沙雷氏菌ATCC 274的全基因组序列
Microbiol Resour Announc. 2020 Apr 9;9(15):e00164-20. doi: 10.1128/MRA.00164-20.
引用本文的文献
1
The man, the plant, and the insect: shooting host specificity determinants in pangenome.人类、植物和昆虫：泛基因组中宿主特异性决定因素的研究
Front Microbiol. 2023 Sep 12;14:1211999. doi: 10.3389/fmicb.2023.1211999. eCollection 2023.
2
IgaA Protein, GumB, Has a Global Impact on the Transcriptome and Surface Proteome of Serratia marcescens.igaA 蛋白、GumB 对粘质沙雷氏菌的转录组和表面蛋白组具有全局影响。
Infect Immun. 2022 Nov 17;90(11):e0039922. doi: 10.1128/iai.00399-22. Epub 2022 Nov 1.
3
Draft Genome Sequence of a Serratia marcescens Strain (PIC3611) Proficient at Recalcitrant Polysaccharide Utilization.一株擅长利用难降解多糖的粘质沙雷氏菌菌株（PIC3611）的基因组草图序列
Microbiol Resour Announc. 2022 Jul 21;11(7):e0030622. doi: 10.1128/mra.00306-22. Epub 2022 Jul 5.
4
The Virulence of Strains Isolated From Contaminated Blood Products Is Divergent in the Infection Model.从受污染血液制品中分离出的菌株在感染模型中的毒力存在差异。
Front Genet. 2021 Jun 10;12:667062. doi: 10.3389/fgene.2021.667062. eCollection 2021.
5
Genome Sequences of Strains Revealed Common Genes in Both Serratomolides Gene Clusters.菌株的基因组序列揭示了 Serratomolides 基因簇中都存在的共同基因。
Biology (Basel). 2020 Dec 20;9(12):482. doi: 10.3390/biology9120482.
6
Proteomic profiling of by high-resolution mass spectrometry.通过高分辨率质谱对……进行蛋白质组分析。
你提供的原文似乎不完整，“Proteomic profiling of ”后面缺少具体内容。
Bioimpacts. 2020;10(2):123-135. doi: 10.34172/bi.2020.15. Epub 2020 Mar 26.
7
Genomic analysis of carbon dioxide sequestering bacterium for exopolysaccharides production.二氧化碳封存菌产胞外多糖的基因组分析。
Sci Rep. 2019 Mar 12;9(1):4270. doi: 10.1038/s41598-019-41052-0.
8
Infections in Neonatal Intensive Care Units (NICUs).新生儿重症监护病房（NICUs）中的感染。
Int J Environ Res Public Health. 2019 Feb 20;16(4):610. doi: 10.3390/ijerph16040610.
9
Outbreaks of Serratia marcescens and Serratia rubidaea bacteremia in a central Kathmandu hospital following the 2015 earthquakes.2015 年地震后加德满都中部一家医院发生粘质沙雷氏菌和鲁氏沙雷菌菌血症暴发。
Trans R Soc Trop Med Hyg. 2018 Oct 1;112(10):467-472. doi: 10.1093/trstmh/try077.
10
Prodigiosin, Violacein, and Volatile Organic Compounds Produced by Widespread Cutaneous Bacteria of Amphibians Can Inhibit Two Batrachochytrium Fungal Pathogens.广泛存在于两栖动物皮肤上的细菌所产生的灵菌红素、紫色杆菌素和挥发性有机化合物可以抑制两种蛙壶菌真菌病原体。
Microb Ecol. 2018 May;75(4):1049-1062. doi: 10.1007/s00248-017-1095-7. Epub 2017 Nov 9.
本文引用的文献
1
Phosphate limitation induces the intergeneric inhibition of Pseudomonas aeruginosa by Serratia marcescens isolated from paper machines.磷酸盐限制诱导了来自造纸机的粘质沙雷氏菌对铜绿假单胞菌的种间抑制。
FEMS Microbiol Ecol. 2013 Jun;84(3):577-87. doi: 10.1111/1574-6941.12086. Epub 2013 Mar 11.
2
Comparative genome analysis of Spiroplasma melliferum IPMB4A, a honeybee-associated bacterium.蜜环菌属 IPMB4A 的比较基因组分析，一种与蜜蜂相关的细菌。
BMC Genomics. 2013 Jan 16;14:22. doi: 10.1186/1471-2164-14-22.
3
GenBank.GenBank。
Nucleic Acids Res. 2012 Jan;40(Database issue):D48-53. doi: 10.1093/nar/gkr1202. Epub 2011 Dec 5.
4
Prodigal: prokaryotic gene recognition and translation initiation site identification.普罗迪格：原核基因识别和翻译起始位点鉴定。
BMC Bioinformatics. 2010 Mar 8;11:119. doi: 10.1186/1471-2105-11-119.
5
BLAST+: architecture and applications.BLAST+：体系结构与应用。
BMC Bioinformatics. 2009 Dec 15;10:421. doi: 10.1186/1471-2105-10-421.
6
KEGG for representation and analysis of molecular networks involving diseases and drugs.KEGG 用于表示和分析涉及疾病和药物的分子网络。
Nucleic Acids Res. 2010 Jan;38(Database issue):D355-60. doi: 10.1093/nar/gkp896. Epub 2009 Oct 30.
7
Velvet: algorithms for de novo short read assembly using de Bruijn graphs.《天鹅绒：使用德布鲁因图进行从头短读长拼接的算法》
Genome Res. 2008 May;18(5):821-9. doi: 10.1101/gr.074492.107. Epub 2008 Mar 18.
8
KAAS: an automatic genome annotation and pathway reconstruction server.KAAS：一个自动基因组注释和通路重建服务器。
Nucleic Acids Res. 2007 Jul;35(Web Server issue):W182-5. doi: 10.1093/nar/gkm321. Epub 2007 May 25.
9
RNAmmer: consistent and rapid annotation of ribosomal RNA genes.RNAmmer：核糖体RNA基因的一致性快速注释
Nucleic Acids Res. 2007;35(9):3100-8. doi: 10.1093/nar/gkm160. Epub 2007 Apr 22.
10
The Serratia gene cluster encoding biosynthesis of the red antibiotic, prodigiosin, shows species- and strain-dependent genome context variation.编码红色抗生素灵菌红素生物合成的沙雷氏菌基因簇表现出物种和菌株依赖性的基因组背景变异。
Microbiology (Reading). 2004 Nov;150(Pt 11):3547-3560. doi: 10.1099/mic.0.27222-0.
Zotero 插件