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詹尼氏芽孢杆菌,一种从海洋沉积物中分离出的放线菌。

Janibacter cremeus sp. nov., an actinobacterium isolated from sea sediment.

机构信息

NITE Biological Resource Center (NBRC), National Institute of Technology and Evaluation, 2-5-8 Kazusakamatari, Kisarazu, Chiba 292-0818, Japan.

Division of Applied Biological Sciences, Interdisciplinary Graduate School of Medicine and Engineering, University of Yamanashi, Takeda-4, Kofu, Yamanashi 400-8511, Japan.

出版信息

Int J Syst Evol Microbiol. 2013 Oct;63(Pt 10):3687-3690. doi: 10.1099/ijs.0.051532-0. Epub 2013 Apr 26.

Abstract

A novel Gram-stain-positive actinobacterium, designated HR08-44(T), was isolated from a sea-sediment sample collected from the foreshore of Rishiri Island, Japan, and its taxonomic position was investigated by a polyphasic approach. Phylogenetic analysis based on 16S rRNA gene sequence comparisons revealed that strain HR08-44(T) was closely related to the members of the genus Janibacter, with pairwise sequence similarities of 97.3-98.8 %. Strain HR08-44(T) had peptidoglycan type A1γ, with meso-diaminopimelic acid as the diagnostic diamino acid. The predominant menaquinone was MK-8(H4) and the major fatty acids were iso-C16 : 0, C17 : 1ω8c, C17 : 0 and C18 : 1ω9c. These data supported the affiliation of the novel strain to the genus Janibacter. Meanwhile, the results of DNA-DNA hybridization and physiological and biochemical tests indicated that strain HR08-44(T) can be distinguished from recognized species of the genus Janibacter. Therefore, strain HR08-44(T) represents a novel species of the genus Janibacter, for which the name Janibacter cremeus sp. nov. is proposed; the type strain is HR08-44(T) ( = NBRC 107693(T) = DSM 26154(T)).

摘要

一株新型革兰氏阳性放线菌,命名为 HR08-44(T),从日本利尻岛前滨的海泥样本中分离得到,并通过多相分类方法研究了其分类地位。基于 16S rRNA 基因序列比较的系统发育分析表明,菌株 HR08-44(T)与 Janibacter 属的成员密切相关,其两两序列相似性为 97.3-98.8%。菌株 HR08-44(T)的肽聚糖类型为 A1γ,以 meso-二氨基庚二酸为特征二氨基酸。主要的类脂醌为 MK-8(H4),主要脂肪酸为 iso-C16:0、C17:1ω8c、C17:0 和 C18:1ω9c。这些数据支持该新菌株属于 Janibacter 属。同时,DNA-DNA 杂交和生理生化试验的结果表明,菌株 HR08-44(T)可与已鉴定的 Janibacter 属种区分开来。因此,菌株 HR08-44(T)代表了 Janibacter 属的一个新种,命名为 Janibacter cremeus sp. nov.;其模式菌株为 HR08-44(T)( = NBRC 107693(T) = DSM 26154(T))。

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