Laboratory of Molecular Evolution and Bioinformatics, Department of Microbiology, Biomedical Sciences Institute, University of São Paulo, São Paulo, Brazil.
PLoS One. 2013 May 13;8(5):e62649. doi: 10.1371/journal.pone.0062649. Print 2013.
DENV-1 is one of the four viral serotypes that causes Dengue, the most common mosquito-borne viral disease of humans. The prevalence of these viruses has grown in recent decades and is now present in more than 100 countries. Limited studies document the spread of DENV-1 over the world despite its importance for human health.
METHODOLOGY/PRINCIPAL FINDINGS: We used representative DENV-1 envelope gene sequences to unravel the dynamics of viral diffusion under a Bayesian phylogeographic approach. Data included strains from 45 distinct geographic locations isolated from 1944 to 2009. The estimated mean rate of nucleotide substitution was 6.56 × 10⁻⁴ substitutions/site/year. The larger genotypes (I, IV and V) had a distinctive phylogenetic structure and since 1990 they experienced effective population size oscillations. Thailand and Indonesia represented the main sources of strains for neighboring countries. Besides, Asia broadcast lineages into the Americas and the Pacific region that diverged in isolation. Also, a transmission network analysis revealed the pivotal role of Indochina in the global diffusion of DENV-1 and of the Caribbean in the diffusion over the Americas.
CONCLUSIONS/SIGNIFICANCE: The study summarizes the spatiotemporal DENV-1 worldwide spread that may help disease control.
DENV-1 是导致登革热的四种病毒血清型之一,登革热是最常见的蚊媒病毒性疾病。这些病毒的流行在最近几十年有所增加,现在存在于 100 多个国家。尽管 DENV-1 对人类健康很重要,但有限的研究记录了其在全球的传播。
方法/主要发现:我们使用具有代表性的 DENV-1 包膜基因序列,采用贝叶斯系统地理学方法来揭示病毒扩散的动态。数据包括 1944 年至 2009 年间从 45 个不同地理位置分离的 45 个不同地理来源的株系。估计的核苷酸替换率平均值为 6.56×10⁻⁴替换/site/年。较大的基因型(I、IV 和 V)具有独特的系统发育结构,自 1990 年以来,它们经历了有效种群大小的波动。泰国和印度尼西亚是邻国菌株的主要来源。此外,亚洲将谱系传播到美洲和太平洋地区,这些谱系在隔离中分化。此外,传播网络分析表明,印度支那在 DENV-1 的全球扩散中以及加勒比在美洲的扩散中发挥了关键作用。
结论/意义:该研究总结了 DENV-1 在全球范围内的时空传播,这可能有助于疾病控制。