登革热病毒1型基因型V在哥伦比亚西部的时空扩散

Spatiotemporal dispersion of DENV-1 genotype V in Western Colombia.

作者信息

Rojas-Gallardo Diana, Ferrell Tyshawn, Escobar-Pereira Paula M, Lopez Diego, Giraldo Beatriz, Restrepo-Chica Juliana, Jimenez-Posada Erika, Martinez-Gutierrez Marlen, Ruiz-Sáenz Julian, Key Autum, Shariatzadeh Nima, Khosravi Dara, Martinez Megan A, Bombin Andrei, Waggoner Jesse J, Osorio Jorge E, Neufeldt Christopher J, Collins Matthew H, Cardona-Ospina Jaime A, Piantadosi Anne

机构信息

Population Biology, Ecology and Evolution Graduate Program, Emory University, 201 Dowman Drive, Atlanta, GA 30322, United States.

Grupo de Investigación Biomedicina, Facultad de Medicina, Institución Universitaria Visión de las Américas, Avenida de las Américas No 98-56 Sector Belmonte, Pereira, Risaralda 660000, Colombia.

出版信息

Virus Evol. 2025 Apr 16;11(1):veaf018. doi: 10.1093/ve/veaf018. eCollection 2025.

Abstract

Dengue virus (DENV) is a significant public health concern in Colombia, with increased transmission of DENV type 1 (DENV-1) in the departments of Risaralda and Valle del Cauca in the Central-West region of the country following a large outbreak in 2019. However, little is known about the source, genetic diversity, and evolution of circulating viruses. We obtained serum samples from individuals with acute DENV infection and analysed DENV-1 genetic diversity, phylodynamics, and phylogeography. We found that most viruses belonged to DENV-1 genotype V, and phylogenetic analysis revealed three distinct clades, each of which was most closely related to viruses from neighbouring departments of Colombia sampled over the last 5-10 years. Thus, the 2019 outbreak and subsequent DENV-1 circulation was not due to the introduction of a new lineage to the country but rather reflected local DENV-1 V dispersion and evolution. We identified amino acid positions under positive selection in structural proteins and NS1, which may have a role in immune evasion and pathogenesis. Overall, our analysis of DENV-1 V diversity, evolution, and spread within Colombia highlights the important role of genomic surveillance in understanding virus dynamics during endemic circulation and outbreaks.

摘要

登革病毒(DENV)是哥伦比亚一个重大的公共卫生问题。2019年该国中西部地区里萨拉尔达省和考卡山谷省爆发大规模疫情后,1型登革病毒(DENV-1)的传播有所增加。然而,对于流行病毒的来源、遗传多样性和进化情况,人们知之甚少。我们从急性登革病毒感染患者身上获取了血清样本,并分析了DENV-1的遗传多样性、系统发育动力学和系统发育地理学。我们发现,大多数病毒属于DENV-1基因型V,系统发育分析揭示了三个不同的进化枝,每个进化枝与过去5至10年在哥伦比亚相邻省份采集的病毒关系最为密切。因此,2019年的疫情爆发及随后的DENV-1传播并非由于新的病毒谱系传入该国,而是反映了当地DENV-1 V型的传播和进化。我们在结构蛋白和NS1中确定了处于正选择下的氨基酸位置,这些位置可能在免疫逃逸和发病机制中发挥作用。总体而言,我们对DENV-1 V型在哥伦比亚境内的多样性、进化和传播情况的分析突出了基因组监测在了解地方流行和疫情爆发期间病毒动态方面的重要作用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/820b/12091148/2af68792c943/veaf018f1.jpg

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