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玫瑰色小杆菌(Gracilimonas rosea),从热带海水中分离得到,是对小杆菌属描述的修正。

Gracilimonas rosea sp. nov., isolated from tropical seawater, and emended description of the genus Gracilimonas.

机构信息

Microbial Oceanography Laboratory, School of Earth and Environmental Sciences, and Research Institute of Oceanography, Seoul National University, 1 Gwanak-ro, Gwanak-gu, Seoul 151-742, Republic of Korea.

Marine Biotechnology Research Division, Korea Institute of Ocean Science and Technology, Ansan 426-744, Republic of Korea.

出版信息

Int J Syst Evol Microbiol. 2013 Nov;63(Pt 11):4006-4011. doi: 10.1099/ijs.0.052340-0. Epub 2013 May 24.

Abstract

A Gram-staining-negative, non-motile, spore-forming, rod-shaped, marine bacterial strain, CL-KR2(T), was isolated from tropical seawater near Kosrae, an island in the Federated States of Micronesia. Analysis of the 16S rRNA gene sequence of strain CL-KR2(T) revealed a clear affiliation with the genus Gracilimonas. Based on phylogenetic analysis, strain CL-KR2(T) showed the closest phylogenetic relationship to Gracilimonas tropica CL-CB462(T), with 16S rRNA gene sequence similarity of 96.6 %. DNA-DNA relatedness between strain CL-KR2(T) and G. tropica CL-CB462(T) was 6.7 % (reciprocal 9.5 %). Strain CL-KR2(T) grew in the presence of 1-20 % sea salts and the optimal salt concentration was 3.5-5 %. The temperature and pH optima for growth were 35 °C and pH 7.5. The major cellular fatty acids (≥10.0 %) of strain CL-KR2(T) were iso-C15 : 0, summed feature 3 (iso-C15 : 0 2-OH and/or C16 : 1ω7c) and iso-C17 : 1ω9c and the only isoprenoid quinone was MK-7. The polar lipids were diphosphatidylglycerol, phosphatidylethanolamine, phosphatidylglycerol, an unidentified phospholipid, two unidentified glycolipids and two unidentified lipids. The genomic DNA G+C content of strain CL-KR2(T) was 43.2 mol%. The combined phenotypic, chemotaxonomic and phylogenetic data showed that strain CL-KR2(T) could be distinguished from the only member of the genus Gracilimonas with a validly published name. Thus, strain CL-KR2(T) should be assigned to a novel species in the genus Gracilimonas, for which the name Gracilimonas rosea sp. nov. is proposed. The type strain is CL-KR2(T) ( = KCCM 90206(T) = JCM 18898(T)).

摘要

一株革兰氏阴性、非运动、产孢、杆状、海洋细菌菌株 CL-KR2(T),从密克罗尼西亚联邦的科斯雷岛附近的热带海水中分离得到。对菌株 CL-KR2(T)的 16S rRNA 基因序列分析表明,它与 Gracilimonas 属有明显的亲缘关系。基于系统发育分析,菌株 CL-KR2(T)与 Gracilimonas tropica CL-CB462(T)的亲缘关系最为密切,16S rRNA 基因序列相似性为 96.6%。菌株 CL-KR2(T)与 G. tropica CL-CB462(T)之间的 DNA-DNA 同源性为 6.7%(相互为 9.5%)。菌株 CL-KR2(T)在 1-20%盐度的海水中生长,最适盐度为 3.5-5%。生长的最适温度和 pH 值分别为 35°C 和 pH 7.5。菌株 CL-KR2(T)的主要细胞脂肪酸(≥10.0%)为 iso-C15:0、summed feature 3(iso-C15:0 2-OH 和/或 C16:1ω7c)和 iso-C17:1ω9c,唯一的异戊烯醌为 MK-7。极性脂为双磷脂酰甘油、磷脂酰乙醇胺、磷脂酰甘油、一种未鉴定的磷脂、两种未鉴定的糖脂和两种未鉴定的脂类。菌株 CL-KR2(T)的基因组 DNA G+C 含量为 43.2mol%。综合表型、化学分类和系统发育数据表明,菌株 CL-KR2(T)与具有有效发表名称的 Gracilimonas 属中唯一的成员可明显区分开来。因此,菌株 CL-KR2(T)应归属于 Gracilimonas 属中的一个新种,建议将其命名为 Gracilimonas rosea sp. nov.。模式菌株为 CL-KR2(T)(=KCCM 90206(T)=JCM 18898(T))。

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