State Key Laboratory for Agrobiotechnology and MOA Key Laboratory of Soil Microbiology, College of Biological Sciences, China Agricultural University, Beijing 100193, China.
Syst Appl Microbiol. 2013 Oct;36(7):467-73. doi: 10.1016/j.syapm.2013.05.001. Epub 2013 Jun 4.
In a survey of rhizobia associated with the native legumes in Yunnan Province, China, seven and nine strains isolated from the root nodules of Psoralea corylifolia, Sesbania cannabina and Medicago lupulina were respectively classified into the novel genomic species groups I and II in the genus Ensifer (former Sinorhizobium) based on the sequence analyses of the 16S rRNA gene. Analyses of concatenated housekeeping genes (atpD, recA and glnII) further revealed that they were distinct lineages in the genus, and group I was most similar to Ensifer terangae and Ensifer garamanticus (both with 94.2% similarity), while group II was most similar to Ensifer adhaerens (94.0%). These groups could be distinguished from closely related species by DNA-DNA relatedness, MALID-TOF MS, cellular fatty acid profiles and a series of phenotypic characters. Therefore, two novel species were proposed: Ensifer psoraleae sp. nov. (seven strains, type strain CCBAU 65732(T)=LMG 26835(T)=HAMBI 3286(T)) and Ensifer sesbaniae sp. nov. (nine strains, type strain CCBAU 65729(T)=LMG 26833(T)=HAMBI 3287(T)). They had a DNA G+C mol% (Tm) of 58.9 and 60.4, respectively. Both of the type strains formed effective nodules on common bean (Phaseolus vulgaris) and their hosts of origin. In addition, the previously described species Sinorhizobium morelense and Sinorhizobium americanum were renamed as Ensifer morelense comb. nov. and Ensifer americanum comb. nov. according to the accumulated data from different studies.
在中国云南省的本土豆科植物根瘤菌调查中,根据 16S rRNA 基因序列分析,从麻叶黄花稔、田菁和紫花苜蓿根瘤中分离到的 7 株和 9 株菌株分别被归入根瘤菌属(前称中华根瘤菌属)中的新基因组种 I 和 II 组。串联看家基因(atpD、recA 和 glnII)的分析进一步表明,它们是属内的不同谱系,I 组与 Ensifer terangae 和 Ensifer garamanticus 最为相似(相似度均为 94.2%),而 II 组与 Ensifer adhaerens 最为相似(相似度为 94.0%)。这些组可以通过 DNA-DNA 同源性、MALDI-TOF MS、细胞脂肪酸图谱和一系列表型特征与密切相关的物种区分开来。因此,提出了两个新种:麻叶黄花稔根瘤菌(Ensifer psoraleae sp. nov.)(7 株,模式株 CCBAU 65732(T)=LMG 26835(T)=HAMBI 3286(T))和田菁根瘤菌(Ensifer sesbaniae sp. nov.)(9 株,模式株 CCBAU 65729(T)=LMG 26833(T)=HAMBI 3287(T))。它们的 DNA G+C mol%(Tm)分别为 58.9 和 60.4。两种模式株均能在普通菜豆上形成有效结瘤,且能在其原籍宿主上结瘤。此外,根据不同研究的累积数据,先前描述的种 Sinorhizobium morelense 和 Sinorhizobium americanum 分别更名为 Ensifer morelense comb. nov. 和 Ensifer americanum comb. nov.。