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水与蛋白质的相互作用:蛋白质动力学的奥秘。

Water-protein interactions: the secret of protein dynamics.

作者信息

Martini Silvia, Bonechi Claudia, Foletti Alberto, Rossi Claudio

机构信息

Department of Biotechnology, Chemistry and Pharmacy, University of Siena, Via Aldo Moro 2, 53100 Siena, Italy.

出版信息

ScientificWorldJournal. 2013 May 22;2013:138916. doi: 10.1155/2013/138916. Print 2013.

Abstract

Water-protein interactions help to maintain flexible conformation conditions which are required for multifunctional protein recognition processes. The intimate relationship between the protein surface and hydration water can be analyzed by studying experimental water properties measured in protein systems in solution. In particular, proteins in solution modify the structure and the dynamics of the bulk water at the solute-solvent interface. The ordering effects of proteins on hydration water are extended for several angstroms. In this paper we propose a method for analyzing the dynamical properties of the water molecules present in the hydration shells of proteins. The approach is based on the analysis of the effects of protein-solvent interactions on water protons NMR relaxation parameters. NMR relaxation parameters, especially the nonselective (R₁(NS)) and selective (R₁(SE)) spin-lattice relaxation rates of water protons, are useful for investigating the solvent dynamics at the macromolecule-solvent interfaces as well as the perturbation effects caused by the water-macromolecule interactions on the solvent dynamical properties. In this paper we demonstrate that Nuclear Magnetic Resonance Spectroscopy can be used to determine the dynamical contributions of proteins to the water molecules belonging to their hydration shells.

摘要

水与蛋白质的相互作用有助于维持多功能蛋白质识别过程所需的灵活构象条件。通过研究在蛋白质溶液体系中测得的实验水性质,可以分析蛋白质表面与水化水之间的密切关系。特别是,溶液中的蛋白质会改变溶质 - 溶剂界面处本体水的结构和动力学。蛋白质对水化水的有序化作用会延伸几个埃。在本文中,我们提出了一种分析蛋白质水化层中水分子动力学性质的方法。该方法基于分析蛋白质 - 溶剂相互作用对水质子核磁共振弛豫参数的影响。核磁共振弛豫参数,特别是水质子的非选择性(R₁(NS))和选择性(R₁(SE))自旋 - 晶格弛豫速率,对于研究大分子 - 溶剂界面处的溶剂动力学以及水 - 大分子相互作用对溶剂动力学性质所造成的扰动效应很有用。在本文中,我们证明了核磁共振光谱可用于确定蛋白质对其水化层中水分子的动力学贡献。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d646/3674730/6020973639a9/TSWJ2013-138916.001.jpg

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