编码片球菌素的生物防腐剂和生物防治菌株嗜酸乳杆菌D3的基因组序列草图
Draft Genome Sequence of the Pediocin-Encoding Biopreservative and Biocontrol Strain Pediococcus acidilactici D3.
作者信息
Sturino Joseph M, Rajendran Mahitha, Altermann Eric
机构信息
Nutrition and Food Science Department, Texas A&M University, College Station, Texas, USA.
出版信息
Genome Announc. 2013 Jun 20;1(3):e00208-13. doi: 10.1128/genomeA.00208-13.
Abstract
We describe a draft genome sequence for Pediococcus acidilactici strain D3, a component of multistrain commercial cultures with biopreservative and biocontrol properties in food-based applications. Strain D3 encodes at least one antimicrobial peptide, pediocin AMPd3. The AMPd3-encoding operon exhibits high sequence similarity to the archetype pediocin, PA-1, encoded by P. acidilactici PAC 1.0.
摘要
我们描述了嗜酸乳杆菌D3菌株的基因组序列草图，该菌株是多菌株商业培养物的一个组成部分，在食品应用中具有生物防腐和生物控制特性。D3菌株编码至少一种抗菌肽，即植物乳杆菌素AMPd3。编码AMPd3的操纵子与嗜酸乳杆菌PAC 1.0编码的原型植物乳杆菌素PA-1具有高度的序列相似性。
相似文献
1
Draft Genome Sequence of the Pediocin-Encoding Biopreservative and Biocontrol Strain Pediococcus acidilactici D3.编码片球菌素的生物防腐剂和生物防治菌株嗜酸乳杆菌D3的基因组序列草图
Genome Announc. 2013 Jun 20;1(3):e00208-13. doi: 10.1128/genomeA.00208-13.
2
Purification and identification of the pediocin produced by Pediococcus acidilactici MM33, a new human intestinal strain.嗜酸乳杆菌MM33（一种新的人类肠道菌株）产生的片球菌素的纯化与鉴定。
J Appl Microbiol. 2008 Jan;104(1):269-75. doi: 10.1111/j.1365-2672.2007.03583.x. Epub 2007 Oct 9.
3
Detection of the pediocin gene pedA in strains from human faeces by real-time PCR and characterization of Pediococcus acidilactici UVA1.通过实时PCR检测人粪便菌株中的片球菌素基因pedA并对嗜酸片球菌UVA1进行特性分析。
BMC Biotechnol. 2007 Sep 12;7:55. doi: 10.1186/1472-6750-7-55.
4
Antimicrobial activity of pediocin PA-1 against Oenococcus oeni and other wine bacteria.肠球菌素 PA-1 对酒香酵母和其他葡萄酒细菌的抗菌活性。
Food Microbiol. 2012 Sep;31(2):167-72. doi: 10.1016/j.fm.2012.03.006. Epub 2012 Mar 20.
5
Purification and primary structure of pediocin PA-1 produced by Pediococcus acidilactici PAC-1.0.嗜酸乳杆菌PAC-1.0产生的片球菌素PA-1的纯化及一级结构
Arch Biochem Biophys. 1992 May 15;295(1):5-12. doi: 10.1016/0003-9861(92)90480-k.
6
An improved and simplified method for the large-scale purification of pediocin PA-1 produced by Pediococcus acidilactici.一种用于大规模纯化嗜酸乳杆菌产生的片球菌素PA-1的改进简化方法。
Biotechnol Appl Biochem. 2006 Feb;43(Pt 2):77-84. doi: 10.1042/BA20050041.
7
The development of bactericidal yeast strains by expressing the Pediococcus acidilactici pediocin gene (pedA) in Saccharomyces cerevisiae.通过在酿酒酵母中表达嗜酸乳杆菌片球菌素基因（pedA）来开发杀菌酵母菌株。
Yeast. 1999 Jun 15;15(8):647-56. doi: 10.1002/(SICI)1097-0061(19990615)15:8<647::AID-YEA409>3.0.CO;2-5.
8
Study of the physicochemical and biological stability of pediocin PA-1 in the upper gastrointestinal tract conditions using a dynamic in vitro model.采用动态体外模型研究肠球菌素 PA-1 在胃肠道上部条件下的理化和生物学稳定性。
J Appl Microbiol. 2010 Jul;109(1):54-64. doi: 10.1111/j.1365-2672.2009.04644.x. Epub 2009 Dec 4.
9
Functional analysis of the pediocin operon of Pediococcus acidilactici PAC1.0: PedB is the immunity protein and PedD is the precursor processing enzyme.嗜酸乳杆菌Pediococcus acidilactici PAC1.0的片球菌素操纵子的功能分析：PedB是免疫蛋白，PedD是前体加工酶。
Mol Microbiol. 1995 Aug;17(3):515-22. doi: 10.1111/j.1365-2958.1995.mmi_17030515.x.
10
Cloning, expression, and nucleotide sequence of genes involved in production of pediocin PA-1, and bacteriocin from Pediococcus acidilactici PAC1.0.嗜酸乳杆菌PAC1.0中与片球菌素PA-1及细菌素产生相关基因的克隆、表达及核苷酸序列
Appl Environ Microbiol. 1992 Aug;58(8):2360-7. doi: 10.1128/aem.58.8.2360-2367.1992.
引用本文的文献
1
GAMOLA2, a Comprehensive Software Package for the Annotation and Curation of Draft and Complete Microbial Genomes.GAMOLA2，一个用于注释和管理草图及完整微生物基因组的综合软件包。
Front Microbiol. 2017 Mar 23;8:346. doi: 10.3389/fmicb.2017.00346. eCollection 2017.
2
Improved antimicrobial activities of synthetic-hybrid bacteriocins designed from enterocin E50-52 and pediocin PA-1.基于肠球菌素E50-52和片球菌素PA-1设计的合成杂合细菌素抗菌活性增强。
Appl Environ Microbiol. 2015 Mar;81(5):1661-7. doi: 10.1128/AEM.03477-14. Epub 2014 Dec 19.
3
Draft Genome Sequence of Lactobacillus animalis 381-IL-28.动物源乳杆菌381-IL-28的基因组序列草图
Genome Announc. 2014 May 29;2(3):e00478-14. doi: 10.1128/genomeA.00478-14.
本文引用的文献
1
Role of lactic acid bacteria as a biosanitizer to prevent attachment of Listeria monocytogenes F6900 on deli slicer contact surfaces.乳酸菌作为生物杀菌剂防止单核细胞增生李斯特菌 F6900 附着在熟食切片机接触表面上的作用。
J Food Prot. 2012 Aug;75(8):1429-36. doi: 10.4315/0362-028X.JFP-12-072.
2
SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing.SPAdes：一种新的基因组组装算法及其在单细胞测序中的应用
J Comput Biol. 2012 May;19(5):455-77. doi: 10.1089/cmb.2012.0021. Epub 2012 Apr 16.
3
Tracing lifestyle adaptation in prokaryotic genomes.追踪原核生物基因组中的生活方式适应性。
Front Microbiol. 2012 Feb 21;3:48. doi: 10.3389/fmicb.2012.00048. eCollection 2012.
4
Draft genome sequence of probiotic strain Pediococcus acidilactici MA18/5M.益生菌菌株戊糖片球菌 MA18/5M 的草图基因组序列。
J Bacteriol. 2012 Feb;194(4):901. doi: 10.1128/JB.06563-11.
5
Phage-based biocontrol strategies to reduce foodborne pathogens in foods.基于噬菌体的生物防治策略以减少食品中的食源性病原体。
Bacteriophage. 2011 May;1(3):130-137. doi: 10.4161/bact.1.3.17629. Epub 2011 May 1.
6
New developments and applications of bacteriocins and peptides in foods.新型细菌素和肽在食品中的开发与应用。
Annu Rev Food Sci Technol. 2011;2:299-329. doi: 10.1146/annurev-food-022510-133721.
7
Reduction of inoculated Salmonella cocktail in ground turkey and turkey breasts using Lactobacillus-based intervention.利用基于乳酸菌的干预措施减少接种的肠炎沙门氏菌混合物在火鸡肉和火鸡胸脯中的数量。
Poult Sci. 2011 Apr;90(4):876-9. doi: 10.3382/ps.2010-00807.
8
Food waste within food supply chains: quantification and potential for change to 2050.食品供应链中的食物浪费：量化分析及 2050 年的变化潜力
Philos Trans R Soc Lond B Biol Sci. 2010 Sep 27;365(1554):3065-81. doi: 10.1098/rstb.2010.0126.
9
Use of microbial antagonism to reduce pathogen levels on produce and meat products: a review.利用微生物拮抗作用降低农产品和肉类产品中的病原体水平：综述
Can J Microbiol. 2006 Nov;52(11):1017-26. doi: 10.1139/w06-058.
10
ACT: the Artemis Comparison Tool.ACT：阿耳忒弥斯比较工具。
Bioinformatics. 2005 Aug 15;21(16):3422-3. doi: 10.1093/bioinformatics/bti553. Epub 2005 Jun 23.
Zotero 插件