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水存在下甲酰胺与二氧化钛及甲酰胺与铂相互作用的活化能计算

Activation Energy Calculations for Formamide-TiO2 and Formamide-Pt Interactions in the Presence of Water.

作者信息

Dushanov E, Kholmurodov Kh, Yasuoka K

机构信息

Laboratory of Radiation Biology, JINR, 141980, Dubna, Moscow Region, Russia ; Institute of Nuclear Physics, 702132, Ulugbek, Tashkent, Uzbekistan.

出版信息

Open Biochem J. 2013 Mar 22;7:33-43. doi: 10.2174/1874091X01307010033. Print 2013.

Abstract

Formamide contains the four elements (C, H, O, and N) most required for life and it is attractive as a potential prebiotic starting material for nucleobase synthesis. In the presence of catalysts (for example, TiO2) and with moderate heating, formamide can pass surface energy barriers, yielding a complete set of nucleic bases and acyclonucleosides, and favoring both phosphorylations and transphosphorylations necessary for life. In the reaction mechanism, interaction with water seems to be an essential factor for the formamide molecule to function. In this paper, a formamide-water solution on a TiO$_2$ (anatase) surface is simulated using the molecular dynamics method, and activation energy calculations are performed for the temperature range of T = 250 K to T = 400 K. A correlation is established between the diffusion and density profiles for the formamide and water molecules on an anatase surface. Also, the calculated activation energies of the formamide-water-anatase and formamide-water-platinum systems are compared. A comparative analysis is performed of the behavior of formamide-water and ethanol-water interaction on the same (anatase and platinum) surfaces.

摘要

甲酰胺包含生命所需的四种最基本元素(碳、氢、氧和氮),作为核苷酸碱基合成潜在的益生元起始原料颇具吸引力。在催化剂(如二氧化钛)存在且适度加热的情况下,甲酰胺能够跨越表面能垒,生成全套核酸碱基和无环核苷,并促进生命所需的磷酸化和转磷酸化反应。在反应机制中,与水的相互作用似乎是甲酰胺分子发挥功能的关键因素。本文采用分子动力学方法模拟了甲酰胺 - 水溶液在TiO₂(锐钛矿)表面的情况,并在T = 250 K至T = 400 K的温度范围内进行了活化能计算。建立了锐钛矿表面甲酰胺和水分子的扩散与密度分布之间的相关性。此外,还比较了甲酰胺 - 水 - 锐钛矿体系和甲酰胺 - 水 - 铂体系的计算活化能。对甲酰胺 - 水和乙醇 - 水在相同(锐钛矿和铂)表面的相互作用行为进行了对比分析。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7ab8/3680988/ff8cc10b9ec1/TOBIOCJ-7-33_F1.jpg

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