Department of Biomedical Engineering, I-SHOU University, Kaohsiung 84001, Taiwan.
Int J Mol Sci. 2013 Jul 11;14(7):14408-25. doi: 10.3390/ijms140714408.
To explore the athermal effect of an external electrostatic field on the stabilities of protein conformations and the binding affinities of protein-protein/ligand interactions, the dependences of the polar and hydrophobic interactions on the external electrostatic field, -Eext, were studied using molecular dynamics (MD) simulations. By decomposing Eext into, along, and perpendicular to the direction formed by the two solutes, the effect of Eext on the interactions between these two solutes can be estimated based on the effects from these two components. Eext was applied along the direction of the electric dipole formed by two solutes with opposite charges. The attractive interaction free energy between these two solutes decreased for solutes treated as point charges. In contrast, the attractive interaction free energy between these two solutes increased, as observed by MD simulations, for Eext = 40 or 60 MV/cm. Eext was applied perpendicular to the direction of the electric dipole formed by these two solutes. The attractive interaction free energy was increased for Eext = 100 MV/cm as a result of dielectric saturation. The force on the solutes along the direction of Eext computed from MD simulations was greater than that estimated from a continuum solvent in which the solutes were treated as point charges. To explore the hydrophobic interactions, Eext was applied to a water cluster containing two neutral solutes. The repulsive force between these solutes was decreased/increased for Eext along/perpendicular to the direction of the electric dipole formed by these two solutes.
为了探究外加静电场对蛋白质构象稳定性和蛋白质-蛋白质/配体相互作用结合亲和力的非热效应,采用分子动力学(MD)模拟研究了外加静电场对极性相互作用和疏水相互作用的依赖关系。通过将 Eext 分解为沿两个溶质形成的方向和垂直于该方向的分量,可以根据这两个分量的影响来估计 Eext 对这两个溶质相互作用的影响。Eext 沿两个带相反电荷的溶质形成的电偶极的方向施加。对于处理为点电荷的溶质,这些溶质之间的吸引相互作用自由能降低。相反,对于 Eext = 40 或 60 MV/cm,MD 模拟观察到这些溶质之间的吸引相互作用自由能增加。Eext 垂直于这两个溶质形成的电偶极的方向施加。由于介电饱和,Eext = 100 MV/cm 时吸引相互作用自由能增加。从 MD 模拟计算得到的沿 Eext 方向作用在溶质上的力大于在连续溶剂中处理为点电荷的溶质的力。为了研究疏水相互作用,将 Eext 施加到含有两个中性溶质的水分子簇上。对于 Eext 沿/垂直于这两个溶质形成的电偶极的方向,这些溶质之间的排斥力减小/增加。