• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

RBcel1的三维结构,一种源自宏基因组的耐冷家族GH5内切葡聚糖酶。

Three-dimensional structure of RBcel1, a metagenome-derived psychrotolerant family GH5 endoglucanase.

作者信息

Delsaute Maud, Berlemont Renaud, Dehareng Dominique, Van Elder Dany, Galleni Moreno, Bauvois Cédric

机构信息

Centre d'Ingénierie des Protéines, Laboratoire de Macromolécules Biologiques, Université de Liège (ULg), Bâtiment B6, Allée de la Chimie 3, 4000 Liège, Belgium.

出版信息

Acta Crystallogr Sect F Struct Biol Cryst Commun. 2013 Aug;69(Pt 8):828-33. doi: 10.1107/S1744309113014565. Epub 2013 Jul 26.

DOI:10.1107/S1744309113014565
PMID:23908022
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3729153/
Abstract

RBcel1 is an endoglucanase belonging to glycoside hydrolase family 5 subfamily 5 (GH5_5) that was recently identified from a soil metagenome library from the Antarctic. Unlike its closest structural homologue (Cel5A from Thermoascus aurantiacus), this enzyme was reported to be able to catalyze transglycosylation reactions and has putatively been implicated in the bacterial cellulose-synthesis process. Here, the structure of RBcel1 at 1.4 Å resolution, solved by molecular replacement, is reported. The structure and putative substrate-binding site are described and compared with those of other GH5_5 subfamily members.

摘要

RBcel1是一种属于糖苷水解酶家族5亚家族5(GH5_5)的内切葡聚糖酶,最近从南极土壤宏基因组文库中鉴定出来。与其最接近的结构同源物(来自橙色嗜热子囊菌的Cel5A)不同,据报道这种酶能够催化转糖基化反应,并且可能参与细菌纤维素合成过程。本文报道了通过分子置换法解析的分辨率为1.4 Å的RBcel1结构。描述了该结构和假定的底物结合位点,并与其他GH5_5亚家族成员的结构进行了比较。

相似文献

1
Three-dimensional structure of RBcel1, a metagenome-derived psychrotolerant family GH5 endoglucanase.RBcel1的三维结构,一种源自宏基因组的耐冷家族GH5内切葡聚糖酶。
Acta Crystallogr Sect F Struct Biol Cryst Commun. 2013 Aug;69(Pt 8):828-33. doi: 10.1107/S1744309113014565. Epub 2013 Jul 26.
2
Highlighting the factors governing transglycosylation in the GH5_5 endo-1,4-β-glucanase RBcel1.突出 GH5_5 内切-1,4-β-葡聚糖酶 RBcel1 中转糖基化的因素。
Acta Crystallogr D Struct Biol. 2022 Mar 1;78(Pt 3):278-289. doi: 10.1107/S2059798321013541. Epub 2022 Feb 18.
3
The 1.62 A structure of Thermoascus aurantiacus endoglucanase: completing the structural picture of subfamilies in glycoside hydrolase family 5.嗜热毁丝霉内切葡聚糖酶的1.62 Å结构:完善糖苷水解酶家族5中亚家族的结构图谱
FEBS Lett. 2002 Jul 17;523(1-3):103-8. doi: 10.1016/s0014-5793(02)02954-x.
4
Cloning and sequence analysis of endoglucanase genes from an industrial fungus, Aspergillus kawachii.来自工业真菌河合曲霉的内切葡聚糖酶基因的克隆与序列分析
Biosci Biotechnol Biochem. 2003 Sep;67(9):2010-3. doi: 10.1271/bbb.67.2010.
5
Crystal structure determination of Pseudomonas stutzeri A1501 endoglucanase Cel5A: the search for a molecular basis for glycosynthesis in GH5_5 enzymes.假单胞菌 A1501 内切葡聚糖酶 Cel5A 的晶体结构测定:寻找 GH5_5 酶中糖基合成的分子基础。
Acta Crystallogr D Struct Biol. 2019 Jun 1;75(Pt 6):605-615. doi: 10.1107/S2059798319007113. Epub 2019 Jun 6.
6
Insights into bacterial cellulose biosynthesis by functional metagenomics on Antarctic soil samples.通过功能宏基因组学对南极土壤样本进行细菌纤维素生物合成的研究洞察
ISME J. 2009 Sep;3(9):1070-81. doi: 10.1038/ismej.2009.48. Epub 2009 May 21.
7
Structure-Function Analysis of a Mixed-linkage β-Glucanase/Xyloglucanase from the Key Ruminal Bacteroidetes Prevotella bryantii B(1)4.来自关键瘤胃拟杆菌普氏栖粪杆菌B(1)4的混合连接β-葡聚糖酶/木葡聚糖酶的结构-功能分析
J Biol Chem. 2016 Jan 15;291(3):1175-97. doi: 10.1074/jbc.M115.691659. Epub 2015 Oct 27.
8
A unique self-truncation of bacterial GH5 endoglucanases leads to enhanced activity and thermostability.细菌 GH5 内切葡聚糖酶的独特自我截断导致活性和热稳定性增强。
BMC Biol. 2022 Jun 9;20(1):137. doi: 10.1186/s12915-022-01334-y.
9
Biochemical and biophysical properties of a metagenome-derived GH5 endoglucanase displaying an unconventional domain architecture.一种具有非常规结构域结构的宏基因组来源的GH5内切葡聚糖酶的生化和生物物理性质。
Int J Biol Macromol. 2017 Jun;99:384-393. doi: 10.1016/j.ijbiomac.2017.02.075. Epub 2017 Feb 24.
10
Glycoside hydrolase family 5: structural snapshots highlighting the involvement of two conserved residues in catalysis.糖苷水解酶家族 5:结构快照突出了两个保守残基在催化中的参与。
Acta Crystallogr D Struct Biol. 2021 Feb 1;77(Pt 2):205-216. doi: 10.1107/S2059798320015557. Epub 2021 Jan 26.

引用本文的文献

1
A novel accessory protein ArCel5 from cellulose-gelatinizing fungus Arthrobotrys sp. CX1.一种来自纤维素糊化真菌节丛孢属菌株CX1的新型辅助蛋白ArCel5。
Bioresour Bioprocess. 2022 Mar 21;9(1):27. doi: 10.1186/s40643-022-00519-1.
2
Highlighting the factors governing transglycosylation in the GH5_5 endo-1,4-β-glucanase RBcel1.突出 GH5_5 内切-1,4-β-葡聚糖酶 RBcel1 中转糖基化的因素。
Acta Crystallogr D Struct Biol. 2022 Mar 1;78(Pt 3):278-289. doi: 10.1107/S2059798321013541. Epub 2022 Feb 18.
3
In silico characterization of the GH5-cellulase family from uncultured microorganisms: physicochemical and structural studies.未培养微生物中GH5纤维素酶家族的计算机模拟表征:物理化学与结构研究
J Genet Eng Biotechnol. 2021 Sep 30;19(1):143. doi: 10.1186/s43141-021-00236-w.

本文引用的文献

1
Evolution, substrate specificity and subfamily classification of glycoside hydrolase family 5 (GH5).糖苷水解酶家族 5(GH5)的进化、底物特异性和亚家族分类。
BMC Evol Biol. 2012 Sep 20;12:186. doi: 10.1186/1471-2148-12-186.
2
Role of Rhizobium endoglucanase CelC2 in cellulose biosynthesis and biofilm formation on plant roots and abiotic surfaces.根瘤菌内切葡聚糖酶 CelC2 在植物根系和非生物表面纤维素生物合成和生物膜形成中的作用。
Microb Cell Fact. 2012 Sep 12;11:125. doi: 10.1186/1475-2859-11-125.
3
DelPhi web server v2: incorporating atomic-style geometrical figures into the computational protocol.DelPhi web 服务器 v2:将原子风格的几何图形纳入计算方案。
Bioinformatics. 2012 Jun 15;28(12):1655-7. doi: 10.1093/bioinformatics/bts200. Epub 2012 Apr 23.
4
Crystal structure of hyperthermophilic endo-β-1,4-glucanase: implications for catalytic mechanism and thermostability.嗜热内切 β-1,4-葡聚糖酶的晶体结构:对催化机制和热稳定性的启示。
J Biol Chem. 2012 Mar 9;287(11):8336-46. doi: 10.1074/jbc.M111.266346. Epub 2011 Nov 29.
5
LigPlot+: multiple ligand-protein interaction diagrams for drug discovery.LigPlot+:用于药物发现的多种配体-蛋白质相互作用图。
J Chem Inf Model. 2011 Oct 24;51(10):2778-86. doi: 10.1021/ci200227u. Epub 2011 Oct 5.
6
A structural study of Hypocrea jecorina Cel5A.棘孢木霉 Cel5A 的结构研究。
Protein Sci. 2011 Nov;20(11):1935-40. doi: 10.1002/pro.730. Epub 2011 Sep 27.
7
Exploring the Antarctic soil metagenome as a source of novel cold-adapted enzymes and genetic mobile elements.探索南极土壤宏基因组作为新型低温适应酶和遗传移动元件的来源。
Rev Argent Microbiol. 2011 Apr-May;43(2):94-103. doi: 10.1590/S0325-75412011000200005.
8
Functional analysis of hyperthermophilic endocellulase from Pyrococcus horikoshii by crystallographic snapshots.通过晶体快照分析嗜热古菌 Pyrococcus horikoshii 内切纤维素酶的功能。
Biochem J. 2011 Jul 15;437(2):223-30. doi: 10.1042/BJ20110292.
9
Apo- and cellopentaose-bound structures of the bacterial cellulose synthase subunit BcsZ.细菌纤维素合酶亚基 BcsZ 结合的 Apo- 和纤维五糖结构。
J Biol Chem. 2011 May 20;286(20):17601-6. doi: 10.1074/jbc.M111.227660. Epub 2011 Mar 25.
10
Structure and function of an arabinoxylan-specific xylanase.阿魏酸木聚糖特异性木聚糖酶的结构与功能。
J Biol Chem. 2011 Jun 24;286(25):22510-20. doi: 10.1074/jbc.M110.217315. Epub 2011 Mar 4.