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一种具有非常规结构域结构的宏基因组来源的GH5内切葡聚糖酶的生化和生物物理性质。

Biochemical and biophysical properties of a metagenome-derived GH5 endoglucanase displaying an unconventional domain architecture.

作者信息

Pimentel Agnes C, Ematsu Gabriela C G, Liberato Marcelo V, Paixão Douglas A A, Franco Cairo João Paulo L, Mandelli Fernanda, Tramontina Robson, Gandin César A, de Oliveira Neto Mario, Squina Fabio M, Alvarez Thabata M

机构信息

Laboratório Nacional de Ciência e Tecnologia do Bioetanol (CTBE), Centro Nacional de Pesquisa em Energia e Materiais (CNPEM), Caixa Postal 6192, CEP 13083-970, Campinas, São Paulo, Brazil; Departamento de Bioquímica, Instituto de Biologia (IB), Universidade Estadual de Campinas (UNICAMP), R. Monteiro Lobato, 255 - Cidade Universitária, Campinas, São Paulo, Brazil.

Laboratório Nacional de Ciência e Tecnologia do Bioetanol (CTBE), Centro Nacional de Pesquisa em Energia e Materiais (CNPEM), Caixa Postal 6192, CEP 13083-970, Campinas, São Paulo, Brazil.

出版信息

Int J Biol Macromol. 2017 Jun;99:384-393. doi: 10.1016/j.ijbiomac.2017.02.075. Epub 2017 Feb 24.

Abstract

Endoglucanases are key enzymes in the degradation of cellulose, the most abundant polymer on Earth. The aim of this work was to perform the biochemical and biophysical characterization of CelE2, a soil metagenome derived endoglucanase. CelE2 harbors a conserved domain from glycoside hydrolase family 5 (GH5) and a C-terminal domain with identity to Calx-beta domains. The recombinant CelE2 displayed preference for hydrolysis of oat beta-glucan, followed by lichenan and carboxymethyl cellulose. Optimum values of enzymatic activity were observed at 45°C and pH 5.3, and CelE2 exhibited considerable thermal stability at 40°C for up to 360min. Regarding the cleavage pattern on polysaccharides, the release of oligosaccharides with a wide degree of polymerization indicated a characteristic of endoglucanase activity. Furthermore, the analysis of products generated from the cleavage of cellooligosaccharides suggested that CelE2 exhibited transglycosylation activity. Interestingly, the presence of CaCl positively affect CelE2, including in the presence of surfactants. SAXS experiments provided key information on the effect of CaCl on the stability of CelE2 and dummy atom and rigid-body models were generated. To the best of our knowledge this is the first biochemical and biophysical characterization of an endoglucanase from family GH5 displaying this unconventional modular organization.

摘要

内切葡聚糖酶是纤维素降解过程中的关键酶,纤维素是地球上最丰富的聚合物。本研究的目的是对源自土壤宏基因组的内切葡聚糖酶CelE2进行生化和生物物理特性分析。CelE2含有来自糖苷水解酶家族5(GH5)的保守结构域和与钙结合蛋白β结构域具有同源性的C端结构域。重组CelE2对燕麦β-葡聚糖的水解表现出偏好,其次是地衣多糖和羧甲基纤维素。在45°C和pH 5.3条件下观察到酶活性的最佳值,并且CelE2在40°C下具有相当高的热稳定性,长达360分钟。关于多糖的切割模式,释放出具有广泛聚合度的寡糖表明具有内切葡聚糖酶活性的特征。此外,对纤维二糖切割产生的产物分析表明CelE2表现出转糖基化活性。有趣的是,CaCl的存在对CelE2有积极影响,包括在表面活性剂存在的情况下。小角X射线散射实验提供了关于CaCl对CelE2稳定性影响的关键信息,并生成了虚拟原子和刚体模型。据我们所知,这是首次对具有这种非常规模块化组织的GH5家族内切葡聚糖酶进行生化和生物物理特性分析。

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