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蛋白质静电性质预先决定磷酸化后表面疏水性变化的程度。

Protein Electrostatic Properties Predefining the Level of Surface Hydrophobicity Change upon Phosphorylation.

作者信息

Polyansky Anton A, Zagrovic Bojan

机构信息

Department of Structural and Computational Biology, Max F. Perutz Laboratories, University of Vienna , Campus Vienna Biocenter 5, Vienna AT-1030, Austria ; M.M. Shemyakin and Yu.A. Ovchinnikov Institute of Bioorganic Chemistry, Russian Academy of Sciences , Moscow 117997, Russia ; Mediterranean Institute for Life Sciences , Split, Croatia.

出版信息

J Phys Chem Lett. 2012 Apr 19;3(8):973-976. doi: 10.1021/jz300103p. Epub 2012 Mar 22.

Abstract

We use explicit-solvent, molecular dynamics simulations to study the change in polar properties of a solvent-accessible surface for proteins undergoing phosphorylation. We analyze eight different pairs of proteins representing different structural classes in native and phosphorylated states and estimate the polarity of their surface using the molecular hydrophobicity potential approach. Whereas the phosphorylation-induced hydrophobicity change in the vicinity of phosphosites does not vary strongly among the studied proteins, the equivalent change for complete proteins covers a surprisingly wide range of effects including even an increase in the overall hydrophobicity in some cases. Importantly, the observed changes are strongly related to electrostatic properties of proteins, such as the net charge per residue, the distribution of charged side-chain contacts, and the isoelectric point. These features predefine the level of surface hydrophobicity change upon phosphorylation and may thus contribute to the phosphorylation-induced alteration of the interactions between a protein and its environment.

摘要

我们使用显式溶剂分子动力学模拟来研究蛋白质磷酸化过程中溶剂可及表面极性性质的变化。我们分析了八对不同的蛋白质,它们代表天然状态和磷酸化状态下不同的结构类别,并使用分子疏水性势方法估计其表面的极性。虽然在所研究的蛋白质中,磷酸化位点附近由磷酸化诱导的疏水性变化差异不大,但完整蛋白质的等效变化涵盖了令人惊讶的广泛影响,甚至在某些情况下包括整体疏水性的增加。重要的是,观察到的变化与蛋白质的静电性质密切相关,例如每个残基的净电荷、带电侧链接触的分布以及等电点。这些特征预先确定了磷酸化时表面疏水性变化的程度,因此可能有助于蛋白质与其环境之间相互作用的磷酸化诱导改变。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4d1a/3726239/7d65eb8a4241/jz-2012-00103p_0003.jpg

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