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全基因组关联分析发现,一个奠基人群中的 TAF3 是人类 MCHC 的一个基因。

Genome wide association analysis of a founder population identified TAF3 as a gene for MCHC in humans.

机构信息

Division of Genetics and Cell Biology, San Raffaele Research Institute and Vita Salute University, Milano, Italy.

出版信息

PLoS One. 2013 Jul 31;8(7):e69206. doi: 10.1371/journal.pone.0069206. Print 2013.

DOI:10.1371/journal.pone.0069206
PMID:23935956
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3729833/
Abstract

The red blood cell related traits are highly heritable but their genetics are poorly defined. Only 5-10% of the total observed variance is explained by the genetic loci found to date, suggesting that additional loci should be searched using approaches alternative to large meta analysis. GWAS (Genome Wide Association Study) for red blood cell traits in a founder population cohort from Northern Italy identified a new locus for mean corpuscular hemoglobin concentration (MCHC) in the TAF3 gene. The association was replicated in two cohorts (rs1887582, P = 4.25E-09). TAF3 encodes a transcription cofactor that participates in core promoter recognition complex, and is involved in zebrafish and mouse erythropoiesis. We show here that TAF3 is required for transcription of the SPTA1 gene, encoding alpha spectrin, one of the proteins that link the plasma membrane to the actin cytoskeleton. Mutations in SPTA1 are responsible for hereditary spherocytosis, a monogenic disorder of MCHC, as well as for the normal MCHC level. Based on our results, we propose that TAF3 is required for normal erythropoiesis in human and that it might have a role in controlling the ratio between hemoglobin (Hb) and cell volume and in the dynamics of RBC maturation in healthy individuals. Finally, TAF3 represents a potential candidate or a modifier gene for disorders of red cell membrane.

摘要

红细胞相关特征具有高度遗传性,但它们的遗传学尚未完全阐明。迄今为止,通过遗传位点发现的总观察方差只有 5-10%可以解释,这表明应该使用不同于大型荟萃分析的方法来搜索其他遗传位点。在意大利北部一个奠基人群体队列中进行的红细胞特征全基因组关联研究(GWAS)发现了 TAF3 基因中平均红细胞血红蛋白浓度(MCHC)的新位点。该关联在两个队列中得到了复制(rs1887582,P=4.25E-09)。TAF3 编码一种转录共因子,参与核心启动子识别复合物,并且在斑马鱼和小鼠的红细胞生成中发挥作用。我们在这里表明,TAF3 是编码α-血影蛋白的 SPTA1 基因转录所必需的,α-血影蛋白是将质膜与肌动蛋白细胞骨架连接的蛋白质之一。SPTA1 突变导致遗传性球形红细胞增多症,这是一种 MCHC 的单基因疾病,以及正常的 MCHC 水平。基于我们的结果,我们提出 TAF3 是人类正常红细胞生成所必需的,并且它可能在控制血红蛋白(Hb)与细胞体积的比例以及在健康个体中 RBC 成熟的动力学方面发挥作用。最后,TAF3 代表了红细胞膜疾病的潜在候选基因或修饰基因。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5dde/3729833/d9d044044d4f/pone.0069206.g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5dde/3729833/ab0b44e1ca0d/pone.0069206.g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5dde/3729833/d9d044044d4f/pone.0069206.g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5dde/3729833/ab0b44e1ca0d/pone.0069206.g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5dde/3729833/d9d044044d4f/pone.0069206.g002.jpg

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2
Small effective population size and genetic homogeneity in the Val Borbera isolate.瓦勒博尔巴雷 isolate 中有效种群规模小且遗传同质性高。
Eur J Hum Genet. 2013 Jan;21(1):89-94. doi: 10.1038/ejhg.2012.113. Epub 2012 Jun 20.
3
Physiological and pathological population dynamics of circulating human red blood cells.循环人红细胞的生理和病理群体动力学。
中性粒细胞与淋巴细胞比值和血小板与淋巴细胞比值的遗传变异体的 2SNP 遗传力和效应。
J Hum Genet. 2017 Nov;62(11):979-988. doi: 10.1038/jhg.2017.76. Epub 2017 Aug 3.
4
Disorders of erythrocyte hydration.红细胞水合异常
Blood. 2017 Dec 21;130(25):2699-2708. doi: 10.1182/blood-2017-04-590810. Epub 2017 Oct 19.
5
Genome-wide Trans-ethnic Meta-analysis Identifies Seven Genetic Loci Influencing Erythrocyte Traits and a Role for RBPMS in Erythropoiesis.全基因组跨种族荟萃分析确定了影响红细胞性状的七个基因位点以及RBPMS在红细胞生成中的作用。
Am J Hum Genet. 2017 Jan 5;100(1):51-63. doi: 10.1016/j.ajhg.2016.11.016. Epub 2016 Dec 22.
6
Meta-analysis of rare and common exome chip variants identifies S1PR4 and other loci influencing blood cell traits.罕见和常见外显子芯片变异的荟萃分析确定了S1PR4和其他影响血细胞特征的基因座。
Nat Genet. 2016 Aug;48(8):867-76. doi: 10.1038/ng.3607. Epub 2016 Jul 11.
7
Large-Scale Exome-wide Association Analysis Identifies Loci for White Blood Cell Traits and Pleiotropy with Immune-Mediated Diseases.大规模外显子组全关联分析确定白细胞性状位点及与免疫介导疾病的多效性。
Am J Hum Genet. 2016 Jul 7;99(1):22-39. doi: 10.1016/j.ajhg.2016.05.003. Epub 2016 Jun 23.
8
Replication and Characterization of Association between ABO SNPs and Red Blood Cell Traits by Meta-Analysis in Europeans.欧洲人群中ABO基因单核苷酸多态性与红细胞性状关联的Meta分析:复制与特征分析
PLoS One. 2016 Jun 9;11(6):e0156914. doi: 10.1371/journal.pone.0156914. eCollection 2016.
Proc Natl Acad Sci U S A. 2010 Nov 23;107(47):20587-92. doi: 10.1073/pnas.1012747107. Epub 2010 Nov 8.
4
Genome-wide association study of hematological and biochemical traits in a Japanese population.全基因组关联研究在一个日本人群中的血液学和生物化学特征。
Nat Genet. 2010 Mar;42(3):210-5. doi: 10.1038/ng.531. Epub 2010 Feb 7.
5
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Nat Genet. 2009 Nov;41(11):1191-8. doi: 10.1038/ng.466. Epub 2009 Oct 11.
6
Heritability and demographic analyses in the large isolated population of Val Borbera suggest advantages in mapping complex traits genes.在瓦尔博尔贝拉这个大型隔离人群中的遗传力和人口统计学分析表明,在绘制复杂特征基因图谱方面具有优势。
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7
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Nat Genet. 2009 Nov;41(11):1182-90. doi: 10.1038/ng.467. Epub 2009 Oct 11.
8
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Dev Biol. 2010 Mar 15;339(2):225-9. doi: 10.1016/j.ydbio.2009.08.009. Epub 2009 Aug 13.