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质子促进水氧化:催化金属簇周围第二配体层的作用。

Proton transport facilitating water-oxidation: the role of second sphere ligands surrounding the catalytic metal cluster.

机构信息

Department of Microbiology and Molecular Genetics, Oklahoma State University, 307 Life Sciences East, Stillwater, OK, 74078, USA.

出版信息

Photosynth Res. 2013 Oct;116(2-3):215-29. doi: 10.1007/s11120-013-9907-1. Epub 2013 Aug 24.

DOI:10.1007/s11120-013-9907-1
PMID:23975203
Abstract

The ability of PSII to extract electrons from water, with molecular oxygen as a by-product, is a remarkable biochemical and evolutionary innovation. From an evolutionary perspective, the invention of PSII approximately 2.7 Ga led to the accelerated accumulation of biomass in the biosphere and the accumulation of oxygen in the atmosphere, a combination that allowed for the evolution of a much more complex and extensive biosphere than would otherwise have been possible. From the biochemical and enzymatic perspective, PSII is remarkable because of the thermodynamic and kinetic obstacles that needed to have been overcome to oxidize water as the ultimate photosynthetic electron donor. This article focuses on how proton release is an integral part of how these kinetic and thermodynamic obstacles have been overcome: the sequential removal of protons from the active site of H2O-oxidation facilitates the multistep oxidation of the substrate water at the Mn4CaOx, the catalytic heart of the H2O-oxidation reaction. As noted previously, the facilitated deprotonation of the Mn4CaOx cluster exerts a redox-leveling function preventing the accumulation of excess positive charge on the cluster, which might otherwise hinder the already energetically difficult oxidation of water. Using recent results, including the characteristics of site-directed mutants, the role of the second sphere of amino acid ligands and the associated network of water molecules surrounding the Mn4CaOx is discussed in relation to proton transport in other systems. In addition to the redox-leveling function, a trapping function is assigned to the proton release step occurring immediately prior to the dioxygen chemistry. This trapping appears to involve a yet-to-be clarified gating mechanism that facilitates to coordinated release of a proton from the neighborhood of the active site thereby insuring that the backward charge-recombination reaction does not out-compete the forward reaction of dioxygen chemistry during this final step of H2O-oxidation.

摘要

PSII 从水中提取电子,同时将分子氧作为副产物,这是一种非凡的生化和进化创新。从进化的角度来看,大约 27 亿年前 PSII 的发明导致了生物圈内生物量的加速积累和大气中氧气的积累,这种组合使得生物界的进化变得更加复杂和广泛,否则是不可能的。从生化和酶学的角度来看,PSII 之所以引人注目,是因为需要克服热力学和动力学障碍才能将水氧化为最终的光合作用电子供体。本文重点介绍质子释放如何成为克服这些动力学和热力学障碍的重要组成部分:从 H2O 氧化的活性位点连续去除质子有助于在 Mn4CaOx 上逐步氧化底物水,Mn4CaOx 是 H2O 氧化反应的催化核心。如前所述,Mn4CaOx 簇的促进去质子化发挥了氧化还原水平化功能,防止簇上积累过多的正电荷,否则可能会阻碍已经具有挑战性的水氧化。利用最近的结果,包括定点突变的特征、第二氨基酸配体层的作用以及围绕 Mn4CaOx 的相关水分子网络,讨论了质子在其他系统中的传输作用。除了氧化还原水平化功能外,还将质子释放步骤分配给氧化学发生之前的捕获功能。这种捕获似乎涉及到一个尚未阐明的门控机制,该机制促进了从活性位点附近协调释放质子,从而确保在 H2O 氧化的最后一步中,反向电荷重组反应不会与氧化学的正向反应竞争。

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本文引用的文献

1
A hydrogen-atom abstraction model for the function of YZ in photosynthetic oxygen evolution.YZ 在光合作用产氧功能中的氢原子抽取模型。
Photosynth Res. 1995 Nov;46(1-2):177-84. doi: 10.1007/BF00020428.
2
Detection of an intermediary, protonated water cluster in photosynthetic oxygen evolution.在光合作用产氧中检测到中介质子化水团簇。
Proc Natl Acad Sci U S A. 2013 Jun 25;110(26):10634-9. doi: 10.1073/pnas.1306532110. Epub 2013 Jun 11.
3
Reflections on substrate water and dioxygen formation.关于底物水和双氧生成的思考。
光系统II的S态中快速底物水的交换受大量水通过通道扩散的限制——对水氧化机制的启示。
Chem Sci. 2021 Sep 1;12(38):12763-12775. doi: 10.1039/d1sc02265b. eCollection 2021 Oct 6.
4
Intramolecular hydrogen-bonding in a cobalt aqua complex and electrochemical water oxidation activity.钴水合配合物中的分子内氢键与电化学水氧化活性
Chem Sci. 2018 Feb 6;9(10):2750-2755. doi: 10.1039/c7sc04960a. eCollection 2018 Mar 14.
5
Interaction of methanol with the oxygen-evolving complex: atomistic models, channel identification, species dependence, and mechanistic implications.甲醇与析氧复合物的相互作用:原子模型、通道识别、物种依赖性及机理意义
Chem Sci. 2016 Oct 1;7(10):6463-6476. doi: 10.1039/c6sc02340a. Epub 2016 Jul 5.
6
Structural rearrangements preceding dioxygen formation by the water oxidation complex of photosystem II.光系统II水氧化复合物形成双氧之前的结构重排。
Proc Natl Acad Sci U S A. 2015 Nov 10;112(45):E6139-47. doi: 10.1073/pnas.1512008112. Epub 2015 Oct 27.
7
Modeling of the redox state dynamics in photosystem II of Chlorella pyrenoidosa Chick cells and leaves of spinach and Arabidopsis thaliana from single flash-induced fluorescence quantum yield changes on the 100 ns-10 s time scale.基于100纳秒至10秒时间尺度上单闪光诱导荧光量子产率变化,对小球藻(Chlorella pyrenoidosa Chick)细胞、菠菜叶片及拟南芥(Arabidopsis thaliana)光系统II中氧化还原状态动力学进行建模。
Photosynth Res. 2015 Aug;125(1-2):123-40. doi: 10.1007/s11120-015-0163-4. Epub 2015 Jun 7.
8
Biochemistry and theory of proton-coupled electron transfer.质子耦合电子转移的生物化学与理论
Chem Rev. 2014 Apr 9;114(7):3381-465. doi: 10.1021/cr4006654. Epub 2014 Apr 1.
Biochim Biophys Acta. 2013 Aug-Sep;1827(8-9):1020-30. doi: 10.1016/j.bbabio.2013.01.013. Epub 2013 Feb 1.
4
Alternating electron and proton transfer steps in photosynthetic water oxidation.光合作用水氧化中电子和质子转移步骤的交替。
Proc Natl Acad Sci U S A. 2012 Oct 2;109(40):16035-40. doi: 10.1073/pnas.1206266109. Epub 2012 Sep 17.
5
Exploring the energetics of water permeation in photosystem II by multiple steered molecular dynamics simulations.通过多次引导分子动力学模拟探索光系统II中水渗透的能量学。
Biochim Biophys Acta. 2012 Sep;1817(9):1671-8. doi: 10.1016/j.bbabio.2012.05.016. Epub 2012 Jun 6.
6
Extended protein/water H-bond networks in photosynthetic water oxidation.光合水氧化中扩展的蛋白质/水氢键网络
Biochim Biophys Acta. 2012 Aug;1817(8):1177-90. doi: 10.1016/j.bbabio.2012.03.031. Epub 2012 Apr 4.
7
A hydrogen-bonding network plays a catalytic role in photosynthetic oxygen evolution.氢键网络在光合作用产氧中起催化作用。
Proc Natl Acad Sci U S A. 2012 Apr 17;109(16):6112-7. doi: 10.1073/pnas.1200093109. Epub 2012 Apr 2.
8
Time-resolved infrared detection of the proton and protein dynamics during photosynthetic oxygen evolution.时间分辨红外探测光合作用产氧过程中质子和蛋白质动力学。
Biochemistry. 2012 Apr 17;51(15):3205-14. doi: 10.1021/bi300294n. Epub 2012 Apr 4.
9
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Phys Chem Chem Phys. 2012 Apr 14;14(14):4849-56. doi: 10.1039/c2cp00034b. Epub 2012 Jan 25.
10
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J Am Chem Soc. 2012 Jan 18;134(2):1147-52. doi: 10.1021/ja209176e. Epub 2012 Jan 6.