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无乳链球菌SA20 - 06菌株的全基因组序列,该菌株是一种与脑膜脑炎暴发相关的鱼类病原体。

Complete genome sequence of Streptococcus agalactiae strain SA20-06, a fish pathogen associated to meningoencephalitis outbreaks.

作者信息

Pereira Ulisses de Pádua, Rodrigues Dos Santos Anderson, Hassan Syed Shah, Aburjaile Flávia Figueira, Soares Siomar de Castro, Ramos Rommel Thiago Jucá, Carneiro Adriana Ribeiro, Guimarães Luís Carlos, Silva de Almeida Sintia, Diniz Carlos Augusto Almeida, Barbosa Maria Silvanira, Gomes de Sá Pablo, Ali Amjad, Bakhtiar Syeda Marriam, Dorella Fernanda Alves, Zerlotini Adhemar, Araújo Flávio Marcos Gomes, Leite Laura Rabelo, Oliveira Guilherme, Miyoshi Anderson, Silva Artur, Azevedo Vasco, Figueiredo Henrique César Pereira

机构信息

AQUAVET- Laboratory of Aquatic Animal Diseases, Department of Preventive Veterinary Medicine, Federal University of Minas Gerais, Belo Horizonte, MG, Brazil ; Department of Veterinary Medicine, Federal University of Lavras, Lavras, MG, Brazil.

出版信息

Stand Genomic Sci. 2013 May 25;8(2):188-97. doi: 10.4056/sigs.3687314. eCollection 2013.

Abstract

Streptococcus agalactiae (Lancefield group B; GBS) is the causative agent of meningoencephalitis in fish, mastitis in cows, and neonatal sepsis in humans. Meningoencephalitis is a major health problem for tilapia farming and is responsible for high economic losses worldwide. Despite its importance, the genomic characteristics and the main molecular mechanisms involved in virulence of S. agalactiae isolated from fish are still poorly understood. Here, we present the genomic features of the 1,820,886 bp long complete genome sequence of S. agalactiae SA20-06 isolated from a meningoencephalitis outbreak in Nile tilapia (Oreochromis niloticus) from Brazil, and its annotation, consisting of 1,710 protein-coding genes (excluding pseudogenes), 7 rRNA operons, 79 tRNA genes and 62 pseudogenes.

摘要

无乳链球菌(兰斯菲尔德B组;GBS)是鱼类脑膜脑炎、奶牛乳腺炎以及人类新生儿败血症的病原体。脑膜脑炎是罗非鱼养殖中的一个主要健康问题,在全球范围内造成了巨大的经济损失。尽管其具有重要性,但从鱼类分离出的无乳链球菌的基因组特征及其毒力相关的主要分子机制仍知之甚少。在此,我们展示了从巴西尼罗罗非鱼(Oreochromis niloticus)脑膜脑炎疫情中分离出的无乳链球菌SA20 - 06的1,820,886 bp长完整基因组序列的基因组特征及其注释,其由1,710个蛋白质编码基因(不包括假基因)、7个rRNA操纵子、79个tRNA基因和62个假基因组成。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/13ad/3746423/314989a84396/sigs.3687314-f1.jpg

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本文引用的文献

1
Simplifier: a web tool to eliminate redundant NGS contigs.
Bioinformation. 2012;8(20):996-9. doi: 10.6026/97320630008996. Epub 2012 Oct 13.
2
Comparing thousands of circular genomes using the CGView Comparison Tool.
BMC Genomics. 2012 May 23;13:202. doi: 10.1186/1471-2164-13-202.
4
Comparative genomics and the role of lateral gene transfer in the evolution of bovine adapted Streptococcus agalactiae.
Infect Genet Evol. 2011 Aug;11(6):1263-75. doi: 10.1016/j.meegid.2011.04.019. Epub 2011 Apr 22.
5
Improving draft assemblies by iterative mapping and assembly of short reads to eliminate gaps.
Genome Biol. 2010;11(4):R41. doi: 10.1186/gb-2010-11-4-r41. Epub 2010 Apr 13.
6
The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata.
Nucleic Acids Res. 2010 Jan;38(Database issue):D346-54. doi: 10.1093/nar/gkp848. Epub 2009 Nov 13.
7
A SEROLOGICAL DIFFERENTIATION OF SPECIFIC TYPES OF BOVINE HEMOLYTIC STREPTOCOCCI (GROUP B).
J Exp Med. 1934 Mar 31;59(4):441-58. doi: 10.1084/jem.59.4.441.
9
Genotyping of Streptococcus agalactiae strains isolated from fish, human and cattle and their virulence potential in Nile tilapia.
Vet Microbiol. 2010 Jan 6;140(1-2):186-92. doi: 10.1016/j.vetmic.2009.07.025. Epub 2009 Aug 8.
10
Understanding the regulation of Group B Streptococcal virulence factors.
Future Microbiol. 2009 Mar;4(2):201-21. doi: 10.2217/17460913.4.2.201.

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