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一种野生动物疾病监测数据建模方法——以野猪中的古典猪瘟为例。

An approach to model monitoring and surveillance data of wildlife diseases-exemplified by Classical Swine Fever in wild boar.

机构信息

Department of Mathematics and Computer Science, Ernst Moritz Arndt University Greifswald, Walther-Rathenau-Str. 47, 17487 Greifswald, Germany.

出版信息

Prev Vet Med. 2013 Nov 1;112(3-4):355-69. doi: 10.1016/j.prevetmed.2013.07.020. Epub 2013 Aug 19.

DOI:10.1016/j.prevetmed.2013.07.020
PMID:24008002
Abstract

The analysis of epidemiological field data from monitoring and surveillance systems (MOSSs) in wild animals is of great importance in order to evaluate the performance of such systems. By parameter estimation from MOSS data, conclusions about disease dynamics in the observed population can be drawn. To strengthen the analysis, the implementation of a maximum likelihood estimation is the main aim of our work. The new approach presented here is based on an underlying simple SIR (susceptible-infected-recovered) model for a disease scenario in a wildlife population. The three corresponding classes are assumed to govern the intensities (number of animals in the classes) of non-homogeneous Poisson processes. A sampling rate was defined which describes the process of data collection (for MOSSs). Further, the performance of the diagnostics was implemented in the model by a diagnostic matrix containing misclassification rates. Both descriptions of these MOSS parts were included in the Poisson process approach. For simulation studies, the combined model demonstrates its ability to validly estimate epidemiological parameters, such as the basic reproduction rate R0. These parameters will help the evaluation of existing disease control systems. They will also enable comparison with other simulation models. The model has been tested with data from a Classical Swine Fever (CSF) outbreak in wild boars (Sus scrofa scrofa L.) from a region of Germany (1999-2002). The results show that the hunting strategy as a sole control tool is insufficient to decrease the threshold for susceptible animals to eradicate the disease, since the estimated R0 confirms an ongoing epidemic of CSF.

摘要

分析野生动物监测和监测系统(MOSS)中的流行病学实地数据对于评估这些系统的性能非常重要。通过从 MOSS 数据中进行参数估计,可以得出关于观察人群中疾病动态的结论。为了加强分析,实施最大似然估计是我们工作的主要目标。这里提出的新方法基于野生动物种群疾病情景下的基本 SIR(易感-感染-恢复)模型。假设这三个相应的类别控制非均匀泊松过程的强度(类别中的动物数量)。定义了一个采样率,用于描述数据收集过程(用于 MOSS)。此外,通过包含错误分类率的诊断矩阵在模型中实现了诊断性能。这些 MOSS 部分的描述都包含在泊松过程方法中。对于模拟研究,组合模型展示了其有效估计流行病学参数的能力,例如基本繁殖数 R0。这些参数将有助于评估现有的疾病控制系统。它们还将使我们能够与其他模拟模型进行比较。该模型已经使用来自德国一个地区野猪(Sus scrofa scrofa L.)的经典猪瘟(CSF)暴发的数据进行了测试(1999-2002 年)。结果表明,仅作为控制工具的狩猎策略不足以降低清除疾病的易感动物的阈值,因为估计的 R0 证实 CSF 的持续流行。

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