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地中海和撒哈拉橄榄的群体遗传学:分化的地理模式和早期混合的证据。

Population genetics of Mediterranean and Saharan olives: geographic patterns of differentiation and evidence for early generations of admixture.

机构信息

CNRS-UPS-ENFA, EDB, UMR 5174, Bât. 4R1, 31062 Toulouse cedex 9, France.

出版信息

Ann Bot. 2013 Nov;112(7):1293-302. doi: 10.1093/aob/mct196. Epub 2013 Sep 6.

DOI:10.1093/aob/mct196
PMID:24013386
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3806528/
Abstract

BACKGROUND AND AIMS

The olive (Olea europaea subsp. europaea) was domesticated in the Mediterranean area but its wild relatives are distributed over three continents, from the Mediterranean basin to South Africa and south-western Asia. Recent studies suggested that this crop originated in the Levant while a secondary diversification occurred in most westward areas. A possible contribution of the Saharan subspecies (subsp. laperrinei) has been highlighted, but the data available were too limited to draw definite conclusions. Here, patterns of genetic differentiation in the Mediterranean and Saharan olives are analysed to test for recent admixture between these taxa.

METHODS

Nuclear microsatellite and plastid DNA (ptDNA) data were compiled from previous studies and completed for a sample of 470 cultivars, 390 wild Mediterranean trees and 270 Saharan olives. A network was reconstructed for the ptDNA haplotypes, while a Bayesian clustering method was applied to identify the main gene pools in the data set and then simulate and test for early generations of admixture between Mediterranean and Saharan olives.

KEY RESULTS

Four lineages of ptDNA haplotypes are recognized: three from the Mediterranean basin and one from the Sahara. Only one haplotype, primarily distributed in the Sahara, is shared between laperrinei and europaea. This haplotype is detected once in 'Dhokar', a cultivar from the Maghreb. Nuclear microsatellites show geographic patterns of genetic differentiation in the Mediterranean olive that reflect the primary origins of cultivars in the Levant, and indicate a high genetic differentiation between europaea and laperrinei. No first-generation hybrid between europaea and laperrinei is detected, but recent, reciprocal admixture between Mediterranean and Saharan subspecies is found in a few accessions, including 'Dhokar'.

CONCLUSIONS

This study reports for the first time admixture between Mediterranean and Saharan olives. Although its contribution remains limited, Laperrine's olive has been involved in the diversification of cultivated olives.

摘要

背景与目的

油橄榄(Olea europaea subsp. europaea)原产于地中海地区,但它的野生亲缘种分布在三大洲,从地中海盆地到南非和西南亚。最近的研究表明,这种作物起源于黎凡特,而在大多数向西的地区发生了二次多样化。撒哈拉亚种(subsp. laperrinei)可能有一定的贡献,但可用的数据太有限,无法得出明确的结论。在这里,分析了地中海和撒哈拉油橄榄的遗传分化模式,以检验这两个分类单元之间最近的混合情况。

方法

从以前的研究中编译了核微卫星和质体 DNA(ptDNA)数据,并为 470 个品种、390 株野生地中海橄榄树和 270 株撒哈拉油橄榄完成了数据。为 ptDNA 单倍型重建了一个网络,同时应用贝叶斯聚类方法来识别数据集中的主要基因库,然后模拟和检验地中海和撒哈拉油橄榄之间早期的混合世代。

主要结果

识别出四个 ptDNA 单倍型的谱系:三个来自地中海盆地,一个来自撒哈拉沙漠。撒哈拉和欧洲橄榄之间共享的只有一个单倍型,主要分布在撒哈拉沙漠。这个单倍型在来自马格里布的一个品种“Dhokar”中被检测到一次。核微卫星显示地中海橄榄的遗传分化具有地理模式,反映了品种在黎凡特的主要起源,并表明欧洲橄榄和撒哈拉亚种之间存在高度的遗传分化。没有检测到欧洲橄榄和撒哈拉亚种之间的第一代杂交种,但在少数几个品系中发现了地中海和撒哈拉亚种之间的近期、相互的混合,包括“Dhokar”。

结论

本研究首次报告了地中海和撒哈拉油橄榄之间的混合。尽管其贡献仍然有限,但拉珀林的橄榄已经参与了栽培橄榄的多样化。

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Evol Appl. 2014 Feb;7(2):195-211. doi: 10.1111/eva.12110. Epub 2013 Nov 28.
2
The complex history of the olive tree: from Late Quaternary diversification of Mediterranean lineages to primary domestication in the northern Levant.橄榄树的复杂历史:从晚第四纪地中海谱系的多样化到黎凡特北部的原始驯化。
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3
Evolutionary history of almond tree domestication in the Mediterranean basin.地中海盆地扁桃树驯化的进化历史。
Mol Ecol. 2013 Feb;22(4):1092-104. doi: 10.1111/mec.12129. Epub 2012 Nov 27.
4
The effect of close relatives on unsupervised Bayesian clustering algorithms in population genetic structure analysis.近亲对群体遗传结构分析中无监督贝叶斯聚类算法的影响。
Mol Ecol Resour. 2012 Sep;12(5):873-84. doi: 10.1111/j.1755-0998.2012.03156.x. Epub 2012 May 28.
5
New insight into the history of domesticated apple: secondary contribution of the European wild apple to the genome of cultivated varieties.对栽培苹果历史的新认识:欧洲野苹果对栽培品种基因组的二次贡献。
PLoS Genet. 2012;8(5):e1002703. doi: 10.1371/journal.pgen.1002703. Epub 2012 May 10.
6
Primary domestication and early uses of the emblematic olive tree: palaeobotanical, historical and molecular evidence from the Middle East.中东的古植物学、历史和分子证据表明,标志性的橄榄树的最初驯化和早期用途。
Biol Rev Camb Philos Soc. 2012 Nov;87(4):885-99. doi: 10.1111/j.1469-185X.2012.00229.x. Epub 2012 Apr 18.
7
Genetic structure and core collection of the World Olive Germplasm Bank of Marrakech: towards the optimised management and use of Mediterranean olive genetic resources.马拉喀什世界橄榄种质库的遗传结构与核心种质库:迈向地中海橄榄遗传资源的优化管理与利用
Genetica. 2011 Sep;139(9):1083-94. doi: 10.1007/s10709-011-9608-7. Epub 2011 Sep 30.
8
From forest to field: perennial fruit crop domestication.从森林到田野:多年生水果作物的驯化。
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9
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Mol Ecol. 2011 Feb;20(3):456-72. doi: 10.1111/j.1365-294X.2010.04961.x. Epub 2010 Dec 24.