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嗜氨菌Is79的全基因组序列，该菌是一种适应低铵浓度的氨氧化细菌。

Complete genome sequence of Nitrosomonas sp. Is79, an ammonia oxidizing bacterium adapted to low ammonium concentrations.

作者信息

Bollmann Annette, Sedlacek Christopher J, Norton Jeanette, Laanbroek Hendrikus J, Suwa Yuichi, Stein Lisa Y, Klotz Martin G, Arp Daniel, Sayavedra-Soto Luis, Lu Megan, Bruce David, Detter Chris, Tapia Roxanne, Han James, Woyke Tanja, Lucas Susan M, Pitluck Sam, Pennacchio Len, Nolan Matt, Land Miriam L, Huntemann Marcel, Deshpande Shweta, Han Cliff, Chen Amy, Kyrpides Nikos, Mavromatis Konstantinos, Markowitz Victor, Szeto Ernest, Ivanova Natalia, Mikhailova Natalia, Pagani Ioanna, Pati Amrita, Peters Lin, Ovchinnikova Galina, Goodwin Lynne A

机构信息

Miami University, Oxford, Ohio, USA.

出版信息

Stand Genomic Sci. 2013 Feb 25;7(3):469-82. doi: 10.4056/sigs.3517166. eCollection 2013.

DOI:10.4056/sigs.3517166
PMID:24019993
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3764937/
Abstract

Nitrosomonas sp. Is79 is a chemolithoautotrophic ammonia-oxidizing bacterium that belongs to the family Nitrosomonadaceae within the phylum Proteobacteria. Ammonia oxidation is the first step of nitrification, an important process in the global nitrogen cycle ultimately resulting in the production of nitrate. Nitrosomonas sp. Is79 is an ammonia oxidizer of high interest because it is adapted to low ammonium and can be found in freshwater environments around the world. The 3,783,444-bp chromosome with a total of 3,553 protein coding genes and 44 RNA genes was sequenced by the DOE-Joint Genome Institute Program CSP 2006.

摘要

嗜硝化单胞菌属菌株Is79是一种化能无机自养型氨氧化细菌，属于变形菌门硝化单胞菌科。氨氧化是硝化作用的第一步，硝化作用是全球氮循环中的一个重要过程，最终导致硝酸盐的产生。嗜硝化单胞菌属菌株Is79是一种备受关注的氨氧化菌，因为它适应低铵环境，且在世界各地的淡水环境中都能发现。美国能源部联合基因组研究所的2006年社区科学计划（CSP 2006）对其3,783,444碱基对的染色体进行了测序，该染色体共有3,553个蛋白质编码基因和44个RNA基因。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9911/3764937/11dfdf40f79c/sigs.3517166-f4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9911/3764937/3ac098aadb5b/sigs.3517166-f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9911/3764937/0ac2041d461a/sigs.3517166-f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9911/3764937/d9050bc36a26/sigs.3517166-f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9911/3764937/11dfdf40f79c/sigs.3517166-f4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9911/3764937/3ac098aadb5b/sigs.3517166-f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9911/3764937/0ac2041d461a/sigs.3517166-f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9911/3764937/d9050bc36a26/sigs.3517166-f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9911/3764937/11dfdf40f79c/sigs.3517166-f4.jpg

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1
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Nucleic Acids Res. 2012 Jan;40(Database issue):D571-9. doi: 10.1093/nar/gkr1100. Epub 2011 Dec 1.
2
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J Bacteriol. 2011 Sep;193(18):5047-8. doi: 10.1128/JB.05521-11.
3
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Environ Microbiol Rep. 2023 Oct;15(5):404-416. doi: 10.1111/1758-2229.13158. Epub 2023 Apr 20.
4
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Microbiol Spectr. 2023 Feb 14;11(2):e0257122. doi: 10.1128/spectrum.02571-22.
5
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Arch Microbiol. 2022 Aug 17;204(9):560. doi: 10.1007/s00203-022-03173-5.
6
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Front Mol Biosci. 2021 Jun 16;8:686110. doi: 10.3389/fmolb.2021.686110. eCollection 2021.
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7
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8
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Res Microbiol. 2009 Apr;160(3):173-8. doi: 10.1016/j.resmic.2009.01.003.
9
Effect of lake trophic status and rooted macrophytes on community composition and abundance of ammonia-oxidizing prokaryotes in freshwater sediments.湖泊营养状态和水生维管束植物对淡水沉积物中氨氧化原核生物群落组成和丰度的影响。
Appl Environ Microbiol. 2009 May;75(10):3127-36. doi: 10.1128/AEM.02806-08. Epub 2009 Mar 20.
10
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