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CNV 形成的复制机制容易出错。

Replicative mechanisms for CNV formation are error prone.

机构信息

1] Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas, USA. [2] Centro de Pesquisas René Rachou-FIOCRUZ, Belo Horizonte, Brazil.

出版信息

Nat Genet. 2013 Nov;45(11):1319-26. doi: 10.1038/ng.2768. Epub 2013 Sep 22.

DOI:10.1038/ng.2768
PMID:24056715
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3821386/
Abstract

We investigated 67 breakpoint junctions of gene copy number gains in 31 unrelated subjects. We observed a strikingly high frequency of small deletions and insertions (29%) apparently originating from polymerase slippage events, in addition to frameshifts and point mutations in homonucleotide runs (13%), at or flanking the breakpoint junctions of complex copy number variants. These single-nucleotide variants were generated concomitantly with the de novo complex genomic rearrangement (CGR) event. Our findings implicate low-fidelity, error-prone DNA polymerase activity in synthesis associated with DNA repair mechanisms as the cause of local increase in point mutation burden associated with human CGR.

摘要

我们研究了 31 个无关个体中基因拷贝数增益的 67 个断点连接,发现除了复杂拷贝数变异断点连接处的移码和点突变(13%)外,还存在大量明显来源于聚合酶滑动事件的小片段缺失和插入(29%)。这些单核苷酸变异是与从头发生的复杂基因组重排(CGR)事件同时产生的。我们的研究结果表明,与 DNA 修复机制相关的 DNA 合成过程中存在低保真度、易错 DNA 聚合酶活性,这可能是导致人类 CGR 相关点突变负担增加的原因。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a636/3821386/35c7c08c78e2/nihms519650f4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a636/3821386/cae0fb362c2d/nihms519650f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a636/3821386/f4bae34d2412/nihms519650f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a636/3821386/7a2bde175e3c/nihms519650f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a636/3821386/35c7c08c78e2/nihms519650f4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a636/3821386/cae0fb362c2d/nihms519650f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a636/3821386/f4bae34d2412/nihms519650f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a636/3821386/7a2bde175e3c/nihms519650f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a636/3821386/35c7c08c78e2/nihms519650f4.jpg

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Recovery of arrested replication forks by homologous recombination is error-prone.同源重组恢复停滞的复制叉容易出错。
PLoS Genet. 2012;8(10):e1002976. doi: 10.1371/journal.pgen.1002976. Epub 2012 Oct 18.
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De novo CNV formation in mouse embryonic stem cells occurs in the absence of Xrcc4-dependent nonhomologous end joining.
Elife. 2025 Feb 3;13:RP98934. doi: 10.7554/eLife.98934.
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Structural variant allelic heterogeneity in MECP2 duplication syndrome provides insight into clinical severity and variability of disease expression.MECP2 重复综合征中的结构变异等位基因异质性为疾病表达的临床严重程度和变异性提供了见解。
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Multi-omics analysis detail a submicroscopic inv(15)(q14q15) generating fusion transcripts and MEIS2 and NUSAP1 haploinsufficiency.多组学分析详细揭示了一种亚微观的inv(15)(q14q15),它产生融合转录本以及MEIS2和NUSAP1单倍体不足。
Sci Rep. 2024 Dec 5;14(1):30343. doi: 10.1038/s41598-024-81507-7.
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