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小规模膜力学

Small scale membrane mechanics.

作者信息

Rangamani Padmini, Benjamini Ayelet, Agrawal Ashutosh, Smit Berend, Steigmann David J, Oster George

机构信息

Department of Molecular and Cellular Biology, University of California, Berkeley, CA, 94720, USA.

出版信息

Biomech Model Mechanobiol. 2014 Aug;13(4):697-711. doi: 10.1007/s10237-013-0528-6. Epub 2013 Oct 1.

Abstract

Large scale changes to lipid bilayer shapes are well represented by the Helfrich model. However, there are membrane processes that take place at smaller length scales that this model cannot address. In this work, we present a one-dimensional continuum model that captures the mechanics of the lipid bilayer membrane at the length scale of the lipids themselves. The model is developed using the Cosserat theory of surfaces with lipid orientation, or 'tilt', as the fundamental degree of freedom. The Helfrich model can be recovered as a special case when the curvatures are small and the lipid tilt is everywhere zero. We use the tilt model to study local membrane deformations in response to a protein inclusion. Parameter estimates and boundary conditions are obtained from a coarse-grained molecular model using dissipative particle dynamics (DPD) to capture the same phenomenon. The continuum model is able to reproduce the membrane bending, stretch and lipid tilt as seen in the DPD model. The lipid tilt angle relaxes to the bulk tilt angle within 5-6 nm from the protein inclusion. Importantly, for large tilt gradients induced by the proteins, the tilt energy contribution is larger than the bending energy contribution. Thus, the continuum model of tilt accurately captures behaviors at length scales shorter than the membrane thickness.

摘要

脂质双分子层形状的大规模变化可以很好地用赫尔弗里希模型来描述。然而,存在一些在更小长度尺度上发生的膜过程,该模型无法解决这些问题。在这项工作中,我们提出了一个一维连续介质模型,该模型在脂质本身的长度尺度上捕捉脂质双分子层膜的力学特性。该模型是使用具有脂质取向或“倾斜”作为基本自由度的表面科塞尔理论开发的。当曲率较小时且脂质倾斜处处为零时,赫尔弗里希模型可以作为一种特殊情况恢复。我们使用倾斜模型来研究响应蛋白质包含物时的局部膜变形。参数估计和边界条件是从使用耗散粒子动力学(DPD)的粗粒度分子模型中获得的,以捕捉相同的现象。连续介质模型能够再现DPD模型中看到的膜弯曲、拉伸和脂质倾斜。脂质倾斜角在距蛋白质包含物5 - 6纳米范围内松弛到整体倾斜角。重要的是,对于由蛋白质诱导的大倾斜梯度,倾斜能量贡献大于弯曲能量贡献。因此,倾斜的连续介质模型准确地捕捉了比膜厚度更短长度尺度上的行为。

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