Suppr超能文献

粗粒化分子动力学定量研究丰原素与模型双层膜的相互作用。

Interactions between fengycin and model bilayers quantified by coarse-grained molecular dynamics.

机构信息

Department of Biochemistry and Biophysics, University of Rochester, Rochester, New York.

出版信息

Biophys J. 2013 Oct 1;105(7):1612-23. doi: 10.1016/j.bpj.2013.08.034.

Abstract

Bacteria, particularly of the genus Bacillus, produce a wide variety of antifungal compounds. They act by affecting the lipid bilayers of fungal membranes, causing curvature-induced strain and eventual permeabilization. One class of these, known as fengycins, has been commercialized for treating agricultural infections and shows some promise as a possible antifungal pharmaceutical. Understanding the mechanism by which fengycins damage lipid bilayers could prove useful to the future development of related antifungal treatments. In this work, we present multi-microsecond-long simulations of fengycin interacting with different lipid bilayer systems. We see fengycin aggregation and uncover a clear aggregation pattern that is partially influenced by bilayer composition. We also quantify some local bilayer perturbations caused by fengycin binding, including curvature of the lipid bilayer and local electrostatic-driven reorganization.

摘要

细菌,尤其是芽孢杆菌属,会产生多种抗真菌化合物。它们通过影响真菌膜的脂双层起作用,导致曲率诱导的应变,最终导致渗透。其中一类被称为丰原素,已被商业化用于治疗农业感染,并显示出作为一种潜在抗真菌药物的希望。了解丰原素破坏脂双层的机制可能对未来相关抗真菌治疗的发展有用。在这项工作中,我们展示了丰原素与不同脂质双层系统相互作用的长达数微秒的模拟。我们观察到丰原素的聚集,并揭示了一种清晰的聚集模式,这种模式部分受到双层组成的影响。我们还量化了丰原素结合引起的一些局部双层扰动,包括脂质双层的曲率和局部静电驱动的重组。

相似文献

2
Effects of cholesterol on the mechanism of fengycin, a biofungicide.胆固醇对生物杀菌剂fengycin 作用机制的影响。
Biophys J. 2022 May 17;121(10):1963-1974. doi: 10.1016/j.bpj.2022.04.006. Epub 2022 Apr 14.

引用本文的文献

4
Organizations of melittin peptides after spontaneous penetration into cell membranes.蜂毒肽自发穿透细胞膜后的构象。
Biophys J. 2022 Nov 15;121(22):4368-4381. doi: 10.1016/j.bpj.2022.10.002. Epub 2022 Oct 4.
7
Effects of cholesterol on the mechanism of fengycin, a biofungicide.胆固醇对生物杀菌剂fengycin 作用机制的影响。
Biophys J. 2022 May 17;121(10):1963-1974. doi: 10.1016/j.bpj.2022.04.006. Epub 2022 Apr 14.

本文引用的文献

2
Improved Parameters for the Martini Coarse-Grained Protein Force Field.用于马提尼粗粒度蛋白质力场的改进参数
J Chem Theory Comput. 2013 Jan 8;9(1):687-97. doi: 10.1021/ct300646g. Epub 2012 Nov 28.
3
Analysis of calcium-induced effects on the conformation of fengycin.钙诱导对丰原素构象影响的分析。
Spectrochim Acta A Mol Biomol Spectrosc. 2013 Jun;110:450-7. doi: 10.1016/j.saa.2013.03.063. Epub 2013 Mar 23.
6
The Martini coarse-grained force field.马提尼粗粒度力场。
Methods Mol Biol. 2013;924:533-65. doi: 10.1007/978-1-62703-017-5_20.
7
Membrane-active peptides and the clustering of anionic lipids.膜活性肽与阴离子脂质的聚集
Biophys J. 2012 Jul 18;103(2):265-74. doi: 10.1016/j.bpj.2012.06.004. Epub 2012 Jul 17.

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验