祖先重组图的重要性及应用 - Suppr

The importance and application of the ancestral recombination graph.

作者信息

Arenas Miguel

机构信息

Centre for Molecular Biology "Severo Ochoa," Consejo Superior de Investigaciones Científicas, Universidad Autónoma de Madrid Madrid, Spain.

出版信息

Front Genet. 2013 Oct 14;4:206. doi: 10.3389/fgene.2013.00206. eCollection 2013.

DOI:10.3389/fgene.2013.00206

PMID:24133504

原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3796270/

Abstract

摘要

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4442/3796270/bae7af65b1b4/fgene-04-00206-g0001.jpg

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The importance and application of the ancestral recombination graph.

Front Genet. 2013 Oct 14;4:206. doi: 10.3389/fgene.2013.00206. eCollection 2013.

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Theor Popul Biol. 2023 Dec;154:27-39. doi: 10.1016/j.tpb.2023.07.004. Epub 2023 Aug 5.

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本文引用的文献

Genome-wide inference of ancestral recombination graphs.

PLoS Genet. 2014 May 15;10(5):e1004342. doi: 10.1371/journal.pgen.1004342. eCollection 2014.

Coestimation of recombination, substitution and molecular adaptation rates by approximate Bayesian computation.

Heredity (Edinb). 2014 Mar;112(3):255-64. doi: 10.1038/hdy.2013.101. Epub 2013 Oct 23.

GraphML specializations to codify ancestral recombinant graphs.

Front Genet. 2013 Aug 7;4:146. doi: 10.3389/fgene.2013.00146. eCollection 2013.

ACG: rapid inference of population history from recombining nucleotide sequences.

BMC Bioinformatics. 2013 Feb 5;14:40. doi: 10.1186/1471-2105-14-40.

Computer programs and methodologies for the simulation of DNA sequence data with recombination.

Front Genet. 2013 Feb 1;4:9. doi: 10.3389/fgene.2013.00009. eCollection 2013.

ARG-based genome-wide analysis of cacao cultivars.

BMC Bioinformatics. 2012;13 Suppl 19(Suppl 19):S17. doi: 10.1186/1471-2105-13-S19-S17. Epub 2012 Dec 19.

An ancestral recombination graph for diploid populations with skewed offspring distribution.

Genetics. 2013 Jan;193(1):255-90. doi: 10.1534/genetics.112.144329. Epub 2012 Nov 12.

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PLoS Comput Biol. 2012 May;8(5):e1002495. doi: 10.1371/journal.pcbi.1002495. Epub 2012 May 31.

NeXML: rich, extensible, and verifiable representation of comparative data and metadata.

Syst Biol. 2012 Jul;61(4):675-89. doi: 10.1093/sysbio/sys025. Epub 2012 Feb 22.

IRiS: construction of ARG networks at genomic scales.

Bioinformatics. 2011 Sep 1;27(17):2448-50. doi: 10.1093/bioinformatics/btr423. Epub 2011 Jul 15.

The importance and application of the ancestral recombination graph.

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