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染色质模型系统中的DNA拓扑结构。

DNA topology in a chromatin model system.

作者信息

Calascibetta F G, De Santis P, Morosetti S, Savino M, Scipioni A

出版信息

Cell Biophys. 1986 Jun;8(3):177-88. doi: 10.1007/BF02788493.

DOI:10.1007/BF02788493
PMID:2425975
Abstract

The synthetic copolypeptide (Lys33, Leu67)100-Orn20, modeled on some general features of the histone sequences, has been found to supercoil the DNA double helix, wrapping it into a micelle, as a result of cohesive interactions between the polypeptide hydrophobic moieties. X-ray low-angle diffraction of complexes between the polypeptide and DNA is characterized by maxima at 50, 32, and 23 A, reminiscent of the chromatin pattern. The existence of a nucleosome-like structure along the DNA is suggested by gel electrophoresis analysis of DNA fragments after micrococcal nuclease digestion, showing the presence of a fragment of about 100 basepairs (bp) long. Topological experiments on the complexes with supercoiled as well as relaxed circular DNA by two-dimensional gel electrophoresis show the presence of left-handed superhelical turns. The results are in agreement with an intrinsic propensity of B-DNA to writhe into left-handed supercoils.

摘要

模拟组蛋白序列某些一般特征的合成共聚多肽(Lys33,Leu67)100-Orn20,由于多肽疏水部分之间的内聚相互作用,已被发现能使DNA双螺旋超螺旋化,将其包裹成胶束。多肽与DNA复合物的X射线低角度衍射的特征是在50、32和23 Å处出现最大值,这让人联想到染色质模式。微球菌核酸酶消化后DNA片段的凝胶电泳分析表明,DNA上存在类似核小体的结构,显示出存在一个约100个碱基对(bp)长的片段。通过二维凝胶电泳对超螺旋以及松弛环状DNA复合物进行的拓扑实验表明存在左手超螺旋。结果与B-DNA扭结成左手超螺旋的内在倾向一致。

相似文献

1
DNA topology in a chromatin model system.染色质模型系统中的DNA拓扑结构。
Cell Biophys. 1986 Jun;8(3):177-88. doi: 10.1007/BF02788493.
2
A nucleosome-like structure containing DNA and the arginine-rich histones H3 and H4.一种包含DNA以及富含精氨酸的组蛋白H3和H4的核小体样结构。
Nucleic Acids Res. 1977 Jul;4(7):2477-85. doi: 10.1093/nar/4.7.2477.
3
Interaction of the Escherichia coli HU protein with DNA. Evidence for formation of nucleosome-like structures with altered DNA helical pitch.大肠杆菌HU蛋白与DNA的相互作用。形成具有改变的DNA螺旋螺距的核小体样结构的证据。
J Mol Biol. 1986 Jan 5;187(1):47-60. doi: 10.1016/0022-2836(86)90405-5.
4
Neutron scatter and diffraction techniques applied to nucleosome and chromatin structure.应用于核小体和染色质结构的中子散射与衍射技术。
Cell Biophys. 1986 Dec;9(1-2):35-66. doi: 10.1007/BF02797374.
5
Folding of single-stranded DNA on the histone octamer.
FEBS Lett. 1985 Feb 11;181(1):69-73. doi: 10.1016/0014-5793(85)81115-7.
6
Specific interactions between DNA left-handed supercoils and actinomycin D.DNA左手超螺旋与放线菌素D之间的特异性相互作用。
Biophys Chem. 1989 Mar;33(1):11-7. doi: 10.1016/0301-4622(89)80002-x.
7
DNA supercoiling induced by a synthetic polypeptide.
Biopolymers. 1983 Dec;22(12):2517-21. doi: 10.1002/bip.360221206.
8
The dynamic response of upstream DNA to transcription-generated torsional stress.上游DNA对转录产生的扭转应力的动态响应。
Nat Struct Mol Biol. 2004 Nov;11(11):1092-100. doi: 10.1038/nsmb848. Epub 2004 Oct 24.
9
How many base-pairs per turn does DNA have in solution and in chromatin? An answer from wide-angle X-ray scattering.在溶液和染色质中,DNA每圈有多少碱基对?来自广角X射线散射的答案。
Biomed Biochim Acta. 1983;42(6):697-703.
10
[Structural heterogeneity of chromatin preparations at the level of DNA topology].[染色质制剂在DNA拓扑结构水平上的结构异质性]
Biull Eksp Biol Med. 1987 Nov;104(11):557-9.

本文引用的文献

1
Proteolytic digestion studies of chromatin core-histone structure. Identification of the limit peptides of histones H3 and H4.染色质核心组蛋白结构的蛋白水解消化研究。组蛋白H3和H4的极限肽段鉴定。
Eur J Biochem. 1981 Sep;119(1):67-74. doi: 10.1111/j.1432-1033.1981.tb05577.x.
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Quantitative analysis of chromatin structure by circular dichroism.
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3
DNA supercoiling induced by a synthetic polypeptide.
Biopolymers. 1983 Dec;22(12):2517-21. doi: 10.1002/bip.360221206.
4
Correlation of sequence hydrophobicities measures similarity in three-dimensional protein structure.序列疏水性的相关性衡量三维蛋白质结构的相似性。
J Mol Biol. 1983 Dec 25;171(4):479-88. doi: 10.1016/0022-2836(83)90041-4.
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Computer simulation of DNA double-helix dynamics.
Cold Spring Harb Symp Quant Biol. 1983;47 Pt 1:251-62. doi: 10.1101/sqb.1983.047.01.030.
6
3-A resolution structure of a protein with histone-like properties in prokaryotes.原核生物中具有组蛋白样性质的一种蛋白质的3-A分辨率结构。
Nature. 1984;310(5976):376-81. doi: 10.1038/310376a0.
7
Structure of the nucleosome core particle at 7 A resolution.7埃分辨率下核小体核心颗粒的结构。
Nature. 1984;311(5986):532-7. doi: 10.1038/311532a0.
8
Reverse gyrase--a topoisomerase which introduces positive superhelical turns into DNA.反向回旋酶——一种能将正向超螺旋引入DNA的拓扑异构酶。
Nature. 1984;309(5970):677-81. doi: 10.1038/309677a0.
9
Interaction between domains in chromosomal protein HMG-1.染色体蛋白HMG-1中各结构域之间的相互作用。
EMBO J. 1984 Jun;3(6):1255-61. doi: 10.1002/j.1460-2075.1984.tb01960.x.
10
Restrictions of sequence on the thickness of globular protein molecules.球状蛋白质分子厚度的序列限制。
Proc Natl Acad Sci U S A. 1971 Dec;68(12):2928-31. doi: 10.1073/pnas.68.12.2928.