Liu Zhenfeng, Müller Johannes, Li Tao, Alvey Richard M, Vogl Kajetan, Frigaard Niels-Ulrik, Rockwell Nathan C, Boyd Eric S, Tomsho Lynn P, Schuster Stephan C, Henke Petra, Rohde Manfred, Overmann Jörg, Bryant Donald A
Genome Biol. 2013 Nov 22;14(11):R127. doi: 10.1186/gb-2013-14-11-r127.
'Chlorochromatium aggregatum' is a phototrophic consortium, a symbiosis that may represent the highest degree of mutual interdependence between two unrelated bacteria not associated with a eukaryotic host. 'Chlorochromatium aggregatum' is a motile, barrel-shaped aggregate formed from a single cell of 'Candidatus Symbiobacter mobilis", a polarly flagellated, non-pigmented, heterotrophic bacterium, which is surrounded by approximately 15 epibiont cells of Chlorobium chlorochromatii, a non-motile photolithoautotrophic green sulfur bacterium.
We analyzed the complete genome sequences of both organisms to understand the basis for this symbiosis. Chl. chlorochromatii has acquired relatively few symbiosis-specific genes; most acquired genes are predicted to modify the cell wall or function in cell-cell adhesion. In striking contrast, 'Ca. S. mobilis' appears to have undergone massive gene loss, is probably no longer capable of independent growth, and thus may only reproduce when consortia divide. A detailed model for the energetic and metabolic bases of the dependency of 'Ca. S. mobilis' on Chl. chlorochromatii is described.
Genomic analyses suggest that three types of interactions lead to a highly sophisticated relationship between these two organisms. Firstly, extensive metabolic exchange, involving carbon, nitrogen, and sulfur sources as well as vitamins, occurs from the epibiont to the central bacterium. Secondly, 'Ca. S. mobilis' can sense and move towards light and sulfide, resources that only directly benefit the epibiont. Thirdly, electron cycling mechanisms, particularly those mediated by quinones and potentially involving shared protonmotive force, could provide an important basis for energy exchange in this and other symbiotic relationships.
“聚球绿菌”是一种光合共生体,这种共生关系可能代表了两种不相关细菌之间最高程度的相互依存,且这两种细菌与真核宿主无关。“聚球绿菌”是一种可移动的桶状聚集体,由单个“运动共生杆菌候选种”细胞形成,“运动共生杆菌候选种”是一种具极鞭毛、无色素的异养细菌,其周围环绕着约15个绿氯菌细胞,绿氯菌是一种不运动的光合自养绿色硫细菌。
我们分析了这两种生物的完整基因组序列,以了解这种共生关系的基础。绿氯菌获得的共生特异性基因相对较少;大多数获得的基因预计会修饰细胞壁或在细胞间黏附中发挥作用。形成鲜明对比的是,“运动共生杆菌候选种”似乎经历了大量基因丢失,可能不再能够独立生长,因此可能仅在聚集体分裂时进行繁殖。文中描述了“运动共生杆菌候选种”对绿氯菌依赖性的能量和代谢基础的详细模型。
基因组分析表明,三种类型的相互作用导致了这两种生物之间高度复杂的关系。首先,从外共生菌到中心细菌发生了广泛的代谢交换,涉及碳、氮、硫源以及维生素。其次,“运动共生杆菌候选种”能够感知并向光和硫化物移动,而这些资源仅直接使外共生菌受益。第三,电子循环机制,特别是那些由醌介导且可能涉及共享质子动力的机制,可能为这种及其他共生关系中的能量交换提供重要基础。