Häkkinen Antti, Tran Huy, Yli-Harja Olli, Ingalls Brian, Ribeiro Andre S
BMC Syst Biol. 2013;7 Suppl 1(Suppl 1):S3. doi: 10.1186/1752-0509-7-S1-S3. Epub 2013 Aug 12.
We explore whether the process of multimerization can be used as a means to regulate noise in the abundance of functional protein complexes. Additionally, we analyze how this process affects the mean level of these functional units, response time of a gene, and temporal correlation between the numbers of expressed proteins and of the functional multimers. We show that, although multimerization increases noise by reducing the mean number of functional complexes it can reduce noise in comparison with a monomer, when abundance of the functional proteins are comparable. Alternatively, reduction in noise occurs if both monomeric and multimeric forms of the protein are functional. Moreover, we find that multimerization either increases the response time to external signals or decreases the correlation between number of functional complexes and protein production kinetics. Finally, we show that the results are in agreement with recent genome-wide assessments of cell-to-cell variability in protein numbers and of multimerization in essential and non-essential genes in Escherichia coli, and that the effects of multimerization are tangible at the level of genetic circuits.
我们探究多聚化过程是否可作为一种调节功能性蛋白质复合物丰度噪声的手段。此外,我们分析该过程如何影响这些功能单元的平均水平、基因的响应时间以及表达的蛋白质数量与功能性多聚体数量之间的时间相关性。我们表明,尽管多聚化通过减少功能性复合物的平均数量而增加噪声,但与单体相比,当功能性蛋白质的丰度相当时,它可以降低噪声。或者,如果蛋白质的单体和多聚体形式均具有功能,则会出现噪声降低的情况。此外,我们发现多聚化要么增加对外界信号的响应时间,要么降低功能性复合物数量与蛋白质产生动力学之间的相关性。最后,我们表明结果与最近对大肠杆菌中蛋白质数量的细胞间变异性以及必需和非必需基因中的多聚化进行的全基因组评估一致,并且多聚化的影响在遗传回路水平上是切实存在的。