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二聚体 SOS 诱变蛋白 UmuD 以单体形式发挥活性。

The dimeric SOS mutagenesis protein UmuD is active as a monomer.

机构信息

Department of Chemistry and Chemical Biology, Northeastern University, Boston, Massachusetts 02115, USA.

出版信息

J Biol Chem. 2011 Feb 4;286(5):3607-17. doi: 10.1074/jbc.M110.167254. Epub 2010 Nov 29.

Abstract

The homodimeric umuD gene products play key roles in regulating the cellular response to DNA damage in Escherichia coli. UmuD(2) is composed of 139-amino acid subunits and is up-regulated as part of the SOS response. Subsequently, damage-induced RecA·ssDNA nucleoprotein filaments mediate the slow self-cleavage of the N-terminal 24-amino acid arms yielding UmuD'(2). UmuD(2) and UmuD'(2) make a number of distinct protein-protein contacts that both prevent and facilitate mutagenic translesion synthesis. Wild-type UmuD(2) and UmuD'(2) form exceptionally tight dimers in solution; however, we show that the single amino acid change N41D generates stable, active UmuD and UmuD' monomers that functionally mimic the dimeric wild-type proteins. The UmuD N41D monomer is proficient for cleavage and interacts physically with DNA polymerase IV (DinB) and the β clamp. Furthermore, the N41D variants facilitate UV-induced mutagenesis and promote overall cell viability. Taken together, these observations show that a monomeric form of UmuD retains substantial function in vivo and in vitro.

摘要

同源二聚体 umuD 基因产物在调节大肠杆菌中 DNA 损伤的细胞反应中发挥关键作用。UmuD(2)由 139 个氨基酸组成,是 SOS 反应的一部分上调。随后,损伤诱导的 RecA·ssDNA 核蛋白丝介导 N 端 24 个氨基酸臂的缓慢自我切割,产生 UmuD'(2)。UmuD(2)和 UmuD'(2)形成许多不同的蛋白质-蛋白质接触,既防止又促进有差错的跨损伤合成。野生型 UmuD(2)和 UmuD'(2)在溶液中形成异常紧密的二聚体;然而,我们表明,单个氨基酸变化 N41D 产生稳定、活跃的 UmuD 和 UmuD'单体,它们在功能上模拟二聚体野生型蛋白。UmuD N41D 单体能够进行切割,并与 DNA 聚合酶 IV(DinB)和β夹物理相互作用。此外,N41D 变体促进 UV 诱导的突变和提高整体细胞活力。总之,这些观察结果表明,UmuD 的单体形式在体内和体外保留了大量的功能。

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本文引用的文献

1
The Roles of UmuD in Regulating Mutagenesis.
J Nucleic Acids. 2010 Sep 30;2010:947680. doi: 10.4061/2010/947680.
2
UmuD(2) inhibits a non-covalent step during DinB-mediated template slippage on homopolymeric nucleotide runs.
J Biol Chem. 2010 Jul 23;285(30):23086-95. doi: 10.1074/jbc.M110.115774. Epub 2010 May 13.
3
Conformational dynamics of the Escherichia coli DNA polymerase manager proteins UmuD and UmuD'.
J Mol Biol. 2010 Apr 23;398(1):40-53. doi: 10.1016/j.jmb.2010.02.040. Epub 2010 Mar 4.
5
Regulation of Escherichia coli SOS mutagenesis by dimeric intrinsically disordered umuD gene products.
Proc Natl Acad Sci U S A. 2008 Jan 29;105(4):1152-7. doi: 10.1073/pnas.0706067105. Epub 2008 Jan 23.
6
UmuD and RecA directly modulate the mutagenic potential of the Y family DNA polymerase DinB.
Mol Cell. 2007 Dec 28;28(6):1058-70. doi: 10.1016/j.molcel.2007.10.025.
7
Lessons from 50 years of SOS DNA-damage-induced mutagenesis.
Nat Rev Mol Cell Biol. 2007 Jul;8(7):587-94. doi: 10.1038/nrm2198.
8
Intrinsic disorder and functional proteomics.
Biophys J. 2007 Mar 1;92(5):1439-56. doi: 10.1529/biophysj.106.094045. Epub 2006 Dec 8.
9
Thermofluor-based high-throughput stability optimization of proteins for structural studies.
Anal Biochem. 2006 Oct 15;357(2):289-98. doi: 10.1016/j.ab.2006.07.027. Epub 2006 Aug 10.
10
Characterization of Escherichia coli translesion synthesis polymerases and their accessory factors.
Methods Enzymol. 2006;408:318-40. doi: 10.1016/S0076-6879(06)08020-7.

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