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本文引用的文献

1
Isopeptide bonds mechanically stabilize spy0128 in bacterial pili.异肽键在细菌菌毛中机械稳定 spy0128。
Biophys J. 2013 May 7;104(9):2051-7. doi: 10.1016/j.bpj.2013.04.002.
2
Exploiting structure similarity in refinement: automated NCS and target-structure restraints in BUSTER.在精修中利用结构相似性:BUSTER中的自动非晶体学对称性及目标结构约束
Acta Crystallogr D Biol Crystallogr. 2012 Apr;68(Pt 4):368-80. doi: 10.1107/S0907444911056058. Epub 2012 Mar 16.
3
Structure and assembly of Gram-positive bacterial pili: unique covalent polymers.革兰氏阳性菌菌毛的结构与组装:独特的共价聚合物。
Curr Opin Struct Biol. 2012 Apr;22(2):200-7. doi: 10.1016/j.sbi.2012.01.009. Epub 2012 Feb 16.
4
Structural biology of Gram-positive bacterial adhesins.革兰氏阳性菌黏附素的结构生物学
Protein Sci. 2011 May;20(5):759-72. doi: 10.1002/pro.613. Epub 2011 Apr 8.
5
A model for group B Streptococcus pilus type 1: the structure of a 35-kDa C-terminal fragment of the major pilin GBS80.B 群链球菌菌毛 1 型模型:主要菌毛 GBS80 的 35kDa C 末端片段的结构。
J Mol Biol. 2011 Apr 15;407(5):731-43. doi: 10.1016/j.jmb.2011.02.024. Epub 2011 Feb 17.
6
Intramolecular isopeptide bonds: protein crosslinks built for stress?分子内异肽键:为应对压力而构建的蛋白质交联
Trends Biochem Sci. 2011 Apr;36(4):229-37. doi: 10.1016/j.tibs.2010.09.007. Epub 2010 Nov 4.
7
NMR spectroscopic and theoretical analysis of a spontaneously formed Lys-Asp isopeptide bond.对自发形成的赖氨酸-天冬氨酸异肽键的核磁共振光谱和理论分析。
Angew Chem Int Ed Engl. 2010 Nov 2;49(45):8421-5. doi: 10.1002/anie.201004340.
8
A highly unusual thioester bond in a pilus adhesin is required for efficient host cell interaction.一个纤毛黏附素中高度异常的硫酯键对于有效的宿主细胞相互作用是必需的。
J Biol Chem. 2010 Oct 29;285(44):33858-66. doi: 10.1074/jbc.M110.149385. Epub 2010 Aug 19.
9
Two intramolecular isopeptide bonds are identified in the crystal structure of the Streptococcus gordonii SspB C-terminal domain.在链球菌 SspB C 末端结构域的晶体结构中鉴定到两个分子内异肽键。
J Mol Biol. 2010 Apr 2;397(3):740-51. doi: 10.1016/j.jmb.2010.01.065. Epub 2010 Feb 4.
10
The Corynebacterium diphtheriae shaft pilin SpaA is built of tandem Ig-like modules with stabilizing isopeptide and disulfide bonds.白喉棒状杆菌轴丝菌毛蛋白 SpaA 由串联 Ig 样结构域组成,结构域间通过稳定的异肽键和二硫键连接。
Proc Natl Acad Sci U S A. 2009 Oct 6;106(40):16967-71. doi: 10.1073/pnas.0906826106. Epub 2009 Sep 21.

自动催化生成的 Thr-Gln 酯键交联稳定了细菌表面黏附素的重复 Ig 结构域轴。

Autocatalytically generated Thr-Gln ester bond cross-links stabilize the repetitive Ig-domain shaft of a bacterial cell surface adhesin.

机构信息

Maurice Wilkins Centre for Molecular Biodiscovery and School of Biological Sciences, University of Auckland, Auckland 1010, New Zealand.

出版信息

Proc Natl Acad Sci U S A. 2014 Jan 28;111(4):1367-72. doi: 10.1073/pnas.1316855111. Epub 2013 Dec 16.

DOI:10.1073/pnas.1316855111
PMID:24344302
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3910632/
Abstract

Gram-positive bacteria are decorated by a variety of proteins that are anchored to the cell wall and project from it to mediate colonization, attachment to host cells, and pathogenesis. These proteins, and protein assemblies, such as pili, are typically long and thin yet must withstand high levels of mechanical stress and proteolytic attack. The recent discovery of intramolecular isopeptide bond cross-links, formed autocatalytically, in the pili from Streptococcus pyogenes has highlighted the role that such cross-links can play in stabilizing such structures. We have investigated a putative cell-surface adhesin from Clostridium perfringens comprising an N-terminal adhesin domain followed by 11 repeat domains. The crystal structure of a two-domain fragment shows that each domain has an IgG-like fold and contains an unprecedented ester bond joining Thr and Gln side chains. MS confirms the presence of these bonds. We show that the bonds form through an autocatalytic intramolecular reaction catalyzed by an adjacent His residue in a serine protease-like mechanism. Two buried acidic residues assist in the reaction. By mutagenesis, we show that loss of the ester bond reduces the thermal stability drastically and increases susceptibility to proteolysis. As in pilin domains, the bonds are placed at a strategic position joining the first and last strands, even though the Ig fold type differs. Bioinformatic analysis suggests that similar domains and ester bond cross-links are widespread in Gram-positive bacterial adhesins.

摘要

革兰氏阳性菌表面被各种锚定在细胞壁上并从细胞壁伸出的蛋白所修饰,这些蛋白介导细菌的定植、与宿主细胞的黏附以及发病机制。这些蛋白和蛋白组装体(如菌毛)通常又长又细,但必须承受高水平的机械应力和蛋白水解攻击。最近在酿脓链球菌的菌毛中发现了由内部分子间异肽键交联形成的、自动催化的交联,这突出了这种交联在稳定这些结构中的作用。我们研究了产气荚膜梭菌的一种假定的表面黏附素,它由一个 N 端黏附结构域和 11 个重复结构域组成。两个结构域的晶体结构表明,每个结构域都具有 IgG 样折叠,并包含一个前所未有的 Thr 和 Gln 侧链之间的酯键。MS 证实了这些键的存在。我们表明,这些键通过丝氨酸蛋白酶样机制中相邻 His 残基的自动催化的分子内反应形成。两个埋藏的酸性残基有助于该反应。通过突变,我们表明,酯键的缺失大大降低了热稳定性并增加了对蛋白水解的敏感性。与菌毛结构域一样,尽管 Ig 折叠类型不同,但这些键位于连接第一和最后链的战略位置。生物信息学分析表明,类似的结构域和酯键交联在革兰氏阳性菌黏附素中广泛存在。