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来自土拉弗朗西斯菌的糖 N-甲酰基转移酶的三维结构。

Three-dimensional structure of a sugar N-formyltransferase from Francisella tularensis.

机构信息

Department of Biochemistry, University of Wisconsin, Madison, Wisconsin, 53706.

出版信息

Protein Sci. 2014 Mar;23(3):273-83. doi: 10.1002/pro.2409. Epub 2014 Jan 22.

Abstract

N-formylated sugars have been observed on the O-antigens of such pathogenic Gram-negative bacteria as Campylobacter jejuni and Francisella tularensis. Until recently, however, little was known regarding the overall molecular architectures of the N-formyltransferases that are required for the biosynthesis of these unusual sugars. Here we demonstrate that the protein encoded by the wbtj gene from F. tularensis is an N-formyltransferase that functions on dTDP-4-amino-4,6-dideoxy-d-glucose as its substrate. The enzyme, hereafter referred to as WbtJ, demonstrates a strict requirement for N(10) -formyltetrahydrofolate as its carbon source. In addition to the kinetic analysis, the three-dimensional structure of the enzyme was solved in the presence of dTDP-sugar ligands to a nominal resolution of 2.1 Å. Each subunit of the dimeric enzyme is dominated by a "core" domain defined by Met 1 to Ser 185. This core motif harbors the active site residues. Following the core domain, the last 56 residues fold into two α-helices and a β-hairpin motif. The hairpin motif is responsible primarily for the subunit:subunit interface, which is characterized by a rather hydrophobic pocket. From the study presented here, it is now known that WbtJ functions on C-4' amino sugars. Another enzyme recently investigated in the laboratory, WlaRD, formylates only C-3' amino sugars. Strikingly, the quaternary structures of WbtJ and WlaRD are remarkably different. In addition, there are several significant variations in the side chains that line their active site pockets, which may be important for substrate specificity. Details concerning the kinetic and structural properties of WbtJ are presented.

摘要

N-甲酰化糖已在弯曲杆菌和土拉弗朗西斯菌等致病性革兰氏阴性菌的 O-抗原上被观察到。然而,直到最近,对于合成这些不寻常糖所需的 N-甲酰基转移酶的总体分子结构还知之甚少。在这里,我们证明了来自土拉弗朗西斯菌的 wbtj 基因编码的蛋白是一种 N-甲酰基转移酶,它以 dTDP-4-氨基-4,6-二脱氧-d-葡萄糖作为其底物。该酶,以下称为 WbtJ,严格需要 N(10)-甲酰四氢叶酸作为其碳源。除了动力学分析外,还在 dTDP-糖配体存在下解决了酶的三维结构,分辨率达到 2.1 Å。二聚酶的每个亚基都由从 Met1 到 Ser185 的“核心”域主导。这个核心基序包含活性位点残基。在核心结构域之后,最后 56 个残基折叠成两个α-螺旋和一个β发夹结构。发夹结构主要负责亚基:亚基界面,其特征是一个相当疏水的口袋。从这里提出的研究来看,现在知道 WbtJ 在 C-4'氨基糖上起作用。实验室最近研究的另一种酶 WlaRD,仅甲酰化 C-3'氨基糖。引人注目的是,WbtJ 和 WlaRD 的四级结构非常不同。此外,它们的活性位点口袋中的侧链也有几个明显的变化,这可能对底物特异性很重要。介绍了 WbtJ 的动力学和结构特性的详细信息。

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