Department of Chemistry, ‡Institute for Genomic Biology, and §Department of Microbiology; University of Illinois at Urbana-Champaign , Urbana, Illinois 61801, United States.
Biochemistry. 2014 Jan 21;53(2):413-22. doi: 10.1021/bi401529y. Epub 2014 Jan 7.
Thiazole/oxazole-modified microcins (TOMMs) comprise a structurally diverse family of natural products with varied bioactivities linked by the presence of posttranslationally installed thiazol(in)e and oxazol(in)e heterocycles. The detailed investigation of the TOMM biosynthetic enzymes from Bacillus sp. Al Hakam (Balh) has provided significant insight into heterocycle biosynthesis. Thiazoles and oxazoles are installed by the successive action of an ATP-dependent cyclodehydratase (C- and D-protein) and a FMN-dependent dehydrogenase (B-protein), which are responsible for azoline formation and azoline oxidation, respectively. Although several studies have focused on the mechanism of azoline formation, many details regarding the role of the dehydrogenase (B-protein) in overall substrate processing remain unknown. In this work, we evaluated the involvement of the dehydrogenase in determining the order of ring formation as well as the promiscuity of the Balh and microcin B17 cyclodehydratases to accept a panel of noncognate dehydrogenases. In support of the observed promiscuity, a fluorescence polarization assay was utilized to measure binding of the dehydrogenase to the cyclodehydratase using the intrinsic fluorescence of the FMN cofactor. Ultimately, the noncognate dehydrogenases were shown to possess cyclodehydratase-independent activity. A previous study identified a conserved Lys-Tyr motif to be important for dehydrogenase activity. Using the tools developed in this study, the Lys-Tyr motif was shown neither to alter complex formation with the cyclodehydratase nor the reduction potential. Taken together with the known crystal structure of a homologue, our data suggest that the Lys-Tyr motif is of catalytic importance. Overall, this study provides a greater level of insight into the complex orchestration of enzymatic activity during TOMM biosynthesis.
噻唑/噁唑修饰的微菌素 (TOMM) 是一类结构多样的天然产物家族,具有不同的生物活性,其结构通过翻译后安装的噻唑(in)和噁唑(in)杂环连接。对 Bacillus sp. Al Hakam (Balh) 的 TOMM 生物合成酶的详细研究为杂环生物合成提供了重要的见解。噻唑和噁唑通过依赖 ATP 的环脱水酶(C 和 D 蛋白)和依赖 FMN 的脱氢酶(B 蛋白)的连续作用进行安装,它们分别负责氮唑的形成和氮唑的氧化。尽管已有几项研究集中在氮唑形成的机制上,但关于脱氢酶(B 蛋白)在整个底物处理中的作用的许多细节仍然未知。在这项工作中,我们评估了脱氢酶在确定环形成顺序以及 Balh 和微菌素 B17 环脱水酶接受一系列非同源脱氢酶的混杂性中的作用。支持观察到的混杂性,荧光偏振测定法用于使用 FMN 辅因子的固有荧光测量脱氢酶与环脱水酶的结合。最终,非同源脱氢酶被证明具有独立于环脱水酶的活性。先前的研究确定保守的 Lys-Tyr 基序对脱氢酶活性很重要。使用本研究中开发的工具,该基序既不会改变与环脱水酶的复合物形成,也不会改变还原电位。结合已知的同源物晶体结构,我们的数据表明 Lys-Tyr 基序对催化很重要。总的来说,这项研究提供了对 TOMM 生物合成中酶活性复杂协调的更深入了解。