Liu Ruixia, Chen Sumei, Jiang Jiafu, Zhu Lu, Zheng Chen, Han Shuang, Gu Jing, Sun Jing, Li Huiyun, Wang Haibin, Song Aiping, Chen Fadi
College of Horticulture, Nanjing Agricultural University, Nanjing 210095, China.
BMC Genomics. 2013 Dec 26;14:919. doi: 10.1186/1471-2164-14-919.
A lack of competence to form adventitious roots by cuttings of Chrysanthemum (Chrysanthemum morifolium) is an obstacle for the rapid fixation of elite genotypes. We performed a proteomic analysis of cutting bases of chrysanthemum cultivar 'Jinba' during adventitious root formation (ARF) in order to identify rooting ability associated protein and/or to get further insight into the molecular mechanisms controlling adventitious rooting.
The protein profiles during ARF were analyzed by comparing the 2-DE gels between 0-day-old (just severed from the stock plant) and 5-day-old cutting bases of chrysanthemum. A total of 69 differentially accumulated protein spots (two-fold change; t-test: 95% significance) were excised and analyzed using MALDI-TOF/TOF, among which 42 protein spots (assigned as 24 types of proteins and 7 unknown proteins) were confidently identified using the NCBI database. The results demonstrated that 19% proteins were related to carbohydrate and energy metabolism, 16% to photosynthesis, 10% to protein fate, 7% to plant defense, 6% to cell structure, 7% to hormone related, 3% to nitrate metabolism, 3% to lipid metabolism, 3% to ascorbate biosynthesis and 3% to RNA binding, 23% were unknown proteins. Twenty types of differentially accumulated proteins including ACC oxidase (CmACO) were further analyzed at the transcription level, most of which were in accordance with the results of 2-DE. Moreover, the protein abundance changes of CmACO are supported by western blot experiments. Ethylene evolution was higher during the ARF compared with day 0 after cutting, while silver nitrate, an inhibitor of ethylene synthesis, pretreatment delayed the ARF. It suggested that ACC oxidase plays an important role in ARF of chrysanthemum.
The proteomic analysis of cutting bases of chrysanthemum allowed us to identify proteins whose expression was related to ARF. We identified auxin-induced protein PCNT115 and ACC oxidase positively or negatively correlated to ARF, respectively. Several other proteins related to carbohydrate and energy metabolism, protein degradation, photosynthetic and cell structure were also correlated to ARF. The induction of protein CmACO provide a strong case for ethylene as the immediate signal for ARF. This strongly suggests that the proteins we have identified will be valuable for further insight into the molecular mechanisms controlling ARF.
菊花(Chrysanthemum morifolium)插条形成不定根能力的缺乏是快速固定优良基因型的一个障碍。我们对菊花品种‘津巴’不定根形成(ARF)过程中的插条基部进行了蛋白质组学分析,以鉴定与生根能力相关的蛋白质和/或进一步深入了解控制不定根形成的分子机制。
通过比较菊花0天龄(刚从母株上剪下)和5天龄插条基部的二维凝胶电泳,分析了ARF过程中的蛋白质谱。共切除了69个差异积累的蛋白点(两倍变化;t检验:95%显著性),并使用基质辅助激光解吸电离飞行时间串联质谱(MALDI-TOF/TOF)进行分析,其中42个蛋白点(被鉴定为24种蛋白质和7种未知蛋白质)通过NCBI数据库得到了可靠鉴定。结果表明,19%的蛋白质与碳水化合物和能量代谢有关,16%与光合作用有关,10%与蛋白质命运有关,7%与植物防御有关,6%与细胞结构有关,7%与激素相关,3%与硝酸盐代谢有关,3%与脂质代谢有关,3%与抗坏血酸生物合成有关,3%与RNA结合有关,23%为未知蛋白质。包括ACC氧化酶(CmACO)在内的20种差异积累的蛋白质在转录水平上进一步分析,其中大多数与二维凝胶电泳结果一致。此外,western blot实验支持CmACO的蛋白质丰度变化。与扦插后第0天相比,ARF过程中乙烯释放量更高,而乙烯合成抑制剂硝酸银预处理延迟了ARF。这表明ACC氧化酶在菊花ARF中起重要作用。
菊花插条基部的蛋白质组学分析使我们能够鉴定出其表达与ARF相关的蛋白质。我们分别鉴定了生长素诱导蛋白PCNT115和与ARF呈正相关或负相关的ACC氧化酶。其他一些与碳水化合物和能量代谢、蛋白质降解、光合作用和细胞结构相关的蛋白质也与ARF相关。蛋白质CmACO的诱导为乙烯作为ARF的直接信号提供了有力证据。这强烈表明我们鉴定出的蛋白质对于进一步深入了解控制ARF的分子机制将是有价值的。