从切萨皮克湾河口分离出的聚球藻属菌株CB0101的基因组序列草图
Draft Genome Sequence of Synechococcus sp. Strain CB0101, Isolated From the Chesapeake Bay Estuary.
作者信息
Marsan David, Wommack K Eric, Ravel Jacques, Chen Feng
机构信息
The Institute of Marine and Environmental Technology, University of Maryland Center for Environmental Science, Baltimore, Maryland, USA.
出版信息
Genome Announc. 2014 Jan 9;2(1):e01111-13. doi: 10.1128/genomeA.01111-13.
Abstract
Here, we report the draft genome sequence of the estuarine Synechococcus sp. strain CB0101. The genomics information of this strain will facilitate the study of the poorly understood Synechococcus subcluster 5.2 and how this strain is capable of thriving in a dynamic estuarine system, such as the Chesapeake Bay.
摘要
在此，我们报告河口聚球藻属（Synechococcus sp.）菌株CB0101的基因组序列草图。该菌株的基因组学信息将有助于对了解较少的聚球藻亚群5.2以及该菌株如何能够在动态河口系统（如切萨皮克湾）中蓬勃生长的研究。
相似文献
1
Draft Genome Sequence of Synechococcus sp. Strain CB0101, Isolated From the Chesapeake Bay Estuary.从切萨皮克湾河口分离出的聚球藻属菌株CB0101的基因组序列草图
Genome Announc. 2014 Jan 9;2(1):e01111-13. doi: 10.1128/genomeA.01111-13.
2
Complete Genome Sequence of Subcluster 5.2 sp. Strain CB0101, Isolated from the Chesapeake Bay.从切萨皮克湾分离出的亚群5.2 sp. 菌株CB0101的全基因组序列
Microbiol Resour Announc. 2019 Aug 29;8(35):e00484-19. doi: 10.1128/MRA.00484-19.
3
Complete Genome Sequences of Chesapeake Bay Synechococcus Strains CBW1002 and CBW1006 Isolated in Winter.冬季分离的切萨皮克湾聚球藻菌株CBW1002和CBW1006的全基因组序列
Genome Biol Evol. 2021 Feb 3;13(2). doi: 10.1093/gbe/evab009.
4
Toxin-Antitoxin Systems in Estuarine Strain CB0101 and Their Transcriptomic Responses to Environmental Stressors.河口菌株CB0101中的毒素-抗毒素系统及其对环境应激源的转录组反应。
Front Microbiol. 2017 Jul 6;8:1213. doi: 10.3389/fmicb.2017.01213. eCollection 2017.
5
Genome Sequence of sp. Strain LA31, Isolated from a Temperate Estuary.从温带河口分离出的sp.菌株LA31的基因组序列。
Microbiol Resour Announc. 2022 Mar 17;11(3):e0077521. doi: 10.1128/mra.00775-21. Epub 2022 Mar 9.
6
Complete Genome Sequence of Chesapeake Bay Winter sp. Strain CBW1107, a Member of Subalpine Cluster II.切萨皮克湾冬季种菌株CBW1107的全基因组序列，亚高山群集II的一个成员
Microbiol Resour Announc. 2021 Feb 18;10(7):e01399-20. doi: 10.1128/MRA.01399-20.
7
Genome Sequence of the Estuarine sp. Strain NB0720_010.河口[具体物种名]菌株NB0720_010的基因组序列
Microbiol Resour Announc. 2022 Aug 18;11(8):e0015122. doi: 10.1128/mra.00151-22. Epub 2022 Jul 13.
8
Abundance and distribution of Synechococcus spp. and cyanophages in the Chesapeake Bay.切萨皮克湾中聚球藻属和蓝藻噬菌体的丰度和分布。
Appl Environ Microbiol. 2011 Nov;77(21):7459-68. doi: 10.1128/AEM.00267-11. Epub 2011 Aug 5.
9
Distinct patterns of picocyanobacterial communities in winter and summer in the Chesapeake Bay.切萨皮克湾冬季和夏季的微囊藻群落存在明显差异。
Appl Environ Microbiol. 2010 May;76(9):2955-60. doi: 10.1128/AEM.02868-09. Epub 2010 Mar 12.
10
Chesapeake Bay nitrogen fluxes derived from a land-estuarine ocean biogeochemical modeling system: Model description, evaluation, and nitrogen budgets.基于陆地 - 河口 - 海洋生物地球化学建模系统得出的切萨皮克湾氮通量：模型描述、评估及氮收支
J Geophys Res Biogeosci. 2015 Aug;120(8):1666-1695. doi: 10.1002/2015JG002931. Epub 2015 Aug 28.
引用本文的文献
1
Dual thermal ecotypes coexist within a nearly genetically identical population of the unicellular marine cyanobacterium .单细胞海洋蓝细菌的近遗传同质种群中存在两种热生态型共存。
Proc Natl Acad Sci U S A. 2023 Nov 21;120(47):e2315701120. doi: 10.1073/pnas.2315701120. Epub 2023 Nov 16.
2
An Estuarine Cyanophage S-CREM1 Encodes Three Distinct Antitoxin Genes and a Large Number of Non-Coding RNA Genes.河口色球藻噬菌体 S-CREM1 编码三个不同的抗毒素基因和大量非编码 RNA 基因。
Viruses. 2023 Jan 28;15(2):380. doi: 10.3390/v15020380.
3
Seasonal dynamics in picocyanobacterial abundance and clade composition at coastal and offshore stations in the Baltic Sea.波罗的海沿海和近海站位中微囊藻丰度和类群组成的季节性动态。
Sci Rep. 2022 Aug 22;12(1):14330. doi: 10.1038/s41598-022-18454-8.
4
Isolation and Characterization of a Novel Cyanophage Encoding Multiple Auxiliary Metabolic Genes.分离并鉴定一种编码多种辅助代谢基因的新型噬藻体。
Viruses. 2022 Apr 24;14(5):887. doi: 10.3390/v14050887.
5
Genome Sequence of sp. Strain LA31, Isolated from a Temperate Estuary.从温带河口分离出的sp.菌株LA31的基因组序列。
Microbiol Resour Announc. 2022 Mar 17;11(3):e0077521. doi: 10.1128/mra.00775-21. Epub 2022 Mar 9.
6
Complete Genome Sequences of Chesapeake Bay Synechococcus Strains CBW1002 and CBW1006 Isolated in Winter.冬季分离的切萨皮克湾聚球藻菌株CBW1002和CBW1006的全基因组序列
Genome Biol Evol. 2021 Feb 3;13(2). doi: 10.1093/gbe/evab009.
7
Complete Genome Sequence of Subcluster 5.2 sp. Strain CB0101, Isolated from the Chesapeake Bay.从切萨皮克湾分离出的亚群5.2 sp. 菌株CB0101的全基因组序列
Microbiol Resour Announc. 2019 Aug 29;8(35):e00484-19. doi: 10.1128/MRA.00484-19.
8
Cyanophage-encoded lipid desaturases: oceanic distribution, diversity and function.噬藻体编码的脂去饱和酶：海洋分布、多样性和功能。
ISME J. 2018 Feb;12(2):343-355. doi: 10.1038/ismej.2017.159. Epub 2017 Oct 13.
9
Toxin-Antitoxin Systems in Estuarine Strain CB0101 and Their Transcriptomic Responses to Environmental Stressors.河口菌株CB0101中的毒素-抗毒素系统及其对环境应激源的转录组反应。
Front Microbiol. 2017 Jul 6;8:1213. doi: 10.3389/fmicb.2017.01213. eCollection 2017.
10
Picocyanobacteria and deep-ocean fluorescent dissolved organic matter share similar optical properties.微囊藻与深海荧光溶解有机物具有相似的光学性质。
Nat Commun. 2017 May 17;8:15284. doi: 10.1038/ncomms15284.
本文引用的文献
1
Novel lineages of Prochlorococcus and Synechococcus in the global oceans.海洋中新型聚球藻和聚球藻的进化枝。
ISME J. 2012 Feb;6(2):285-97. doi: 10.1038/ismej.2011.106. Epub 2011 Sep 29.
2
Abundance and distribution of Synechococcus spp. and cyanophages in the Chesapeake Bay.切萨皮克湾中聚球藻属和蓝藻噬菌体的丰度和分布。
Appl Environ Microbiol. 2011 Nov;77(21):7459-68. doi: 10.1128/AEM.00267-11. Epub 2011 Aug 5.
3
The JCVI standard operating procedure for annotating prokaryotic metagenomic shotgun sequencing data.用于注释原核生物宏基因组鸟枪法测序数据的JCVI标准操作程序。
Stand Genomic Sci. 2010 Mar 30;2(2):229-37. doi: 10.4056/sigs.651139.
4
Prevalence of highly host-specific cyanophages in the estuarine environment.河口环境中高度宿主特异性蓝藻噬菌体的流行情况。
Environ Microbiol. 2008 Feb;10(2):300-12. doi: 10.1111/j.1462-2920.2007.01452.x. Epub 2007 Sep 28.
5
Diverse and unique picocyanobacteria in Chesapeake Bay, revealed by 16S-23S rRNA internal transcribed spacer sequences.通过16S - 23S rRNA内部转录间隔区序列揭示的切萨皮克湾多样且独特的蓝细菌
Appl Environ Microbiol. 2006 Mar;72(3):2239-43. doi: 10.1128/AEM.72.3.2239-2243.2006.
Zotero 插件