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A genome-wide pairwise-identity-based proposal for the classification of viruses in the genus Mastrevirus (family Geminiviridae).基于全基因组两两比对一致性的番茄卷叶病毒属(双生病毒科)病毒分类建议
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MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods.MEGA5:用于最大似然法、进化距离法和最大简约法的分子进化遗传学分析。
Mol Biol Evol. 2011 Oct;28(10):2731-9. doi: 10.1093/molbev/msr121. Epub 2011 May 4.
4
RDP3: a flexible and fast computer program for analyzing recombination.RDP3:一个灵活快速的计算机程序,用于分析重组。
Bioinformatics. 2010 Oct 1;26(19):2462-3. doi: 10.1093/bioinformatics/btq467. Epub 2010 Aug 26.
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New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0.新算法和方法估计最大似然系统发育:评估 PhyML 3.0 的性能。
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6
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Phytopathology. 2000 Apr;90(4):437-44. doi: 10.1094/PHYTO.2000.90.4.437.
7
Analysis of the biological and molecular variability of Watermelon mosaic virus isolates from Iran.对来自伊朗的西瓜花叶病毒分离株的生物学和分子变异性分析。
Virus Genes. 2008 Dec;37(3):304-13. doi: 10.1007/s11262-008-0271-8. Epub 2008 Aug 20.
8
Molecular resolution of a complex of potyviruses infecting solanaceous crops at the centre of origin in Peru.对秘鲁起源中心感染茄科作物的一组马铃薯Y病毒复合体的分子解析。
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9
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Virus Genes. 2001 Jun;22(3):335-43. doi: 10.1023/a:1011174509453.
10
Identification of the genome-linked protein in virions of Potato virus A, with comparison to other members in genus Potyvirus.马铃薯A病毒病毒粒子中基因组连接蛋白的鉴定,并与马铃薯Y病毒属的其他成员进行比较。
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伊朗马铃薯V病毒感染的发病率及特征

Incidence and characterization of Potato virus V infections in Iran.

作者信息

Shamsadden-Saeed Fatemeh, Massumi Hossain, Moradi Sakineh, Maddahian Mohammad, Heydarnejad Jahangir, Pour Akbar Hosseini, Varsani Arvind

机构信息

Department of Plant Protection, College of Agriculture, Shahid Bahonar University of Kerman, Kerman, Iran.

School of Biological Science, University of Canterbury, Christchurch, 8140 New Zealand.

出版信息

Virusdisease. 2014 Jan;25(1):78-84. doi: 10.1007/s13337-013-0178-4. Epub 2013 Dec 1.

DOI:10.1007/s13337-013-0178-4
PMID:24426313
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3889240/
Abstract

A survey was carried out to determine the extent of Potato virus V (PVV) infection, together with other potyviruses, in Iran in both commercial and local potato varieties. We found a low incidence of PVV in commercial varieties compared to a local potato cultivar Zardi, in which we noted a PVV infection up to ~32.9 %. We determined the genomic sequence 9,812 nucleotides of one isolate (KER.LAL.P) from cultivar Agria and the 3'-terminal sequence including coat protein (CP) gene of four additional isolates from cultivar Zardi. The Iranian isolate PVV KER.LAL.P was found to share 91 % sequence identity with the Scottish isolate DV-42 (AJ243766) of PVV. The CP gene sequences of the PVV isolates from Iran shared 96.5 to 99.3 % pairwise nucleotide identity and they shared <97.5 % pairwise identity with the CP sequences of all other PVV isolates available in public databases. Our host studies indicated that the Iranian PVV isolate had a narrower host range and infected Nicotiana debneyi and N. glutinosa test plants. Within the commercial varieties of potato in Iran, we noted a significant amount of mixed potyvirus infection. This study is the first report of occurrence and complete genome of PVV in Iran.

摘要

开展了一项调查,以确定伊朗商业马铃薯品种和当地马铃薯品种中马铃薯V病毒(PVV)以及其他马铃薯Y病毒属病毒的感染程度。我们发现,与当地马铃薯品种扎尔迪相比,商业品种中PVV的发病率较低,在扎尔迪品种中,我们注意到PVV感染率高达约32.9%。我们测定了来自阿格里亚品种的一个分离株(KER.LAL.P)的9812个核苷酸的基因组序列,以及来自扎尔迪品种的另外四个分离株的包括外壳蛋白(CP)基因在内的3'末端序列。发现伊朗分离株PVV KER.LAL.P与PVV的苏格兰分离株DV-42(AJ243766)具有91%的序列同一性。来自伊朗的PVV分离株的CP基因序列彼此之间具有96.5%至99.3%的成对核苷酸同一性,并且它们与公共数据库中所有其他PVV分离株的CP序列的成对同一性小于97.5%。我们的寄主研究表明,伊朗PVV分离株的寄主范围较窄,可感染德布尼烟草和黏性烟草试验植株。在伊朗的商业马铃薯品种中,我们注意到大量混合马铃薯Y病毒属病毒感染。本研究是伊朗PVV发生情况和完整基因组的首次报道。