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一种用于检测艰难梭菌毒力基因的新型分型检测方法。

A novel subtyping assay for detection of Clostridium difficile virulence genes.

作者信息

Angione Stephanie L, Sarma Aartik A, Novikov Aleksey, Seward Leah, Fieber Jennifer H, Mermel Leonard A, Tripathi Anubhav

机构信息

Center for Biomedical Engineering, School of Engineering, Brown University, Providence, Rhode Island.

Warren Alpert Medical School, Brown University, Providence, Rhode Island.

出版信息

J Mol Diagn. 2014 Mar;16(2):244-52. doi: 10.1016/j.jmoldx.2013.11.006. Epub 2014 Jan 13.

DOI:10.1016/j.jmoldx.2013.11.006
PMID:24434086
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3937534/
Abstract

This proof-of-concept study demonstrates the application of a novel nucleic acid detection platform to detect Clostridium difficile in subjects presenting with acute diarrheal symptoms. This method amplifies three genes associated with C. difficile infection, including genes and deletions (cdtB and tcdC) associated with hypervirulence attributed to the NAP1/027/BI strain. Amplification of DNA from the tcdB, tcdC, and cdtB genes was performed using a droplet-based sandwich platform with quantitative real-time PCR in microliter droplets to detect and identify the amplified fragments of DNA. The device and identification system are simple in design and can be integrated as a point-of-care test to help rapidly detect and identify C. difficile strains that pose significant health threats in hospitals and other health-care communities.

摘要

这项概念验证研究展示了一种新型核酸检测平台在检测出现急性腹泻症状的受试者中艰难梭菌的应用。该方法扩增了与艰难梭菌感染相关的三个基因,包括与NAP1/027/BI菌株所致高毒力相关的基因和缺失(cdtB和tcdC)。使用基于微滴的夹心平台和微升液滴中的定量实时PCR对tcdB、tcdC和cdtB基因的DNA进行扩增,以检测和鉴定扩增的DNA片段。该设备和识别系统设计简单,可整合为即时检测,以帮助快速检测和识别在医院及其他医疗社区中构成重大健康威胁的艰难梭菌菌株。

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Cell Rep. 2023 Aug 29;42(8):112861. doi: 10.1016/j.celrep.2023.112861. Epub 2023 Jul 30.
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Overview of current detection methods and microRNA potential in infection screening. 感染筛查中当前检测方法和 microRNA 潜力概述。
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3
Virulence and genomic diversity among clinical isolates of ST1 (BI/NAP1/027) .ST1(BI/NAP1/027)临床分离株的毒力和基因组多样性
bioRxiv. 2023 Jan 12:2023.01.12.523823. doi: 10.1101/2023.01.12.523823.

本文引用的文献

1
Microdroplet sandwich real-time rt-PCR for detection of pandemic and seasonal influenza subtypes.微滴式夹心实时 RT-PCR 检测大流行和季节性流感亚型。
PLoS One. 2013 Sep 16;8(9):e73497. doi: 10.1371/journal.pone.0073497. eCollection 2013.
2
Emergence and global spread of epidemic healthcare-associated Clostridium difficile.传染病相关艰难梭菌的出现和全球传播。
Nat Genet. 2013 Jan;45(1):109-13. doi: 10.1038/ng.2478. Epub 2012 Dec 9.
3
TcdC does not significantly repress toxin expression in Clostridium difficile 630ΔErm.TcdC 对艰难梭菌 630ΔErm 中的毒素表达没有显著的抑制作用。
PLoS One. 2012;7(8):e43247. doi: 10.1371/journal.pone.0043247. Epub 2012 Aug 17.
4
Molecular techniques for diagnosis of Clostridium difficile infection: systematic review and meta-analysis.分子技术在艰难梭菌感染诊断中的应用:系统评价和荟萃分析。
Mayo Clin Proc. 2012 Jul;87(7):643-51. doi: 10.1016/j.mayocp.2012.02.024.
5
Burden of Clostridium difficile on the healthcare system.艰难梭菌对医疗体系的负担。
Clin Infect Dis. 2012 Aug;55 Suppl 2(Suppl 2):S88-92. doi: 10.1093/cid/cis335.
6
Current status of Clostridium difficile infection epidemiology.艰难梭菌感染流行病学的现状。
Clin Infect Dis. 2012 Aug;55 Suppl 2(Suppl 2):S65-70. doi: 10.1093/cid/cis319.
7
Decreased cure and increased recurrence rates for Clostridium difficile infection caused by the epidemic C. difficile BI strain.由流行的艰难梭菌 BI 菌株引起的艰难梭菌感染的治愈率降低和复发率增加。
Clin Infect Dis. 2012 Aug;55(3):351-7. doi: 10.1093/cid/cis430. Epub 2012 Apr 20.
8
Precise manipulation of the Clostridium difficile chromosome reveals a lack of association between the tcdC genotype and toxin production.精确操纵艰难梭菌染色体表明 tcdC 基因型与毒素产生之间缺乏关联。
Appl Environ Microbiol. 2012 Jul;78(13):4683-90. doi: 10.1128/AEM.00249-12. Epub 2012 Apr 20.
9
Vital signs: preventing Clostridium difficile infections.生命体征:预防艰难梭菌感染。
MMWR Morb Mortal Wkly Rep. 2012 Mar 9;61(9):157-62.
10
Real-time droplet DNA amplification with a new tablet platform.实时液滴 DNA 扩增的新片剂平台。
Anal Chem. 2012 Mar 20;84(6):2654-61. doi: 10.1021/ac202532a. Epub 2012 Feb 29.